View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8601_low_41 (Length: 243)
Name: NF8601_low_41
Description: NF8601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8601_low_41 |
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| [»] chr5 (3 HSPs) |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 11 - 243
Target Start/End: Complemental strand, 3017618 - 3017389
Alignment:
| Q |
11 |
gacatcagacttatttttcatgggatataaccatgtgtagtttgaataatgatcaacaaagattagatagtacaagtagccatctaacgacctaatggga |
110 |
Q |
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|||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3017618 |
gacatcagacttgtttttcatgggatataaccatttgtattttgaataatgatcaacaaagattagatagtacaagtagccatctaacgacctaatggga |
3017519 |
T |
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| Q |
111 |
gcaggtccccatacatccgaataaatattctcaagaggcctagtgctctctatactagaagaagtaaagggcaatttatgactttttgaggtattacaag |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3017518 |
gcaggtccccatacatccgaataaatattctcaagaggcctagtgctctctatacta---gaagtaaagggcaatttatgactttttgaggtattacaag |
3017422 |
T |
|
| Q |
211 |
agatgcatggattgttgataccgtgttttattt |
243 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
3017421 |
agatgcatggattgttgataccgtgttttattt |
3017389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 157
Target Start/End: Original strand, 23971202 - 23971348
Alignment:
| Q |
11 |
gacatcagacttatttttcatgggatataaccatgtgtagtttgaataatgatcaacaaagattagatagtacaagtagccatctaacgacctaatggga |
110 |
Q |
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||||||||||||| |||||| ||||| | ||| |||| || ||| ||||||||| ||| |||| ||| || | | | |||||||| |||||||| ||| |
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| T |
23971202 |
gacatcagacttaaatttcattggataaagccaaatgtatttggaaaaatgatcaataaaaattacataataaacgaaaccatctaaagacctaatagga |
23971301 |
T |
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| Q |
111 |
gcaggtccccatacatccgaataaatattctcaagaggcctagtgct |
157 |
Q |
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| T |
23971302 |
gtagggccccagacatccgaataaatcaactcaagaggtcttgtgct |
23971348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 127
Target Start/End: Complemental strand, 34291766 - 34291651
Alignment:
| Q |
12 |
acatcagacttatttttcatgggatataaccatgtgtagtttgaataatgatcaacaaagattagatagtacaagtagccatctaacgacctaatgggag |
111 |
Q |
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||||| ||||||| |||||| ||||| |||||| || || ||| |||||||||||| ||||| ||||||||| || ||||||| || ||||| |||| |
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| T |
34291766 |
acatctgacttatgtttcattggatacaaccatacatatttggaaaaatgatcaacaatgattaaatagtacaaataaccatctattgatctaataggag |
34291667 |
T |
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| Q |
112 |
caggtccccatacatc |
127 |
Q |
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| T |
34291666 |
ccggcccccaaacatc |
34291651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 159; Significance: 9e-85; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 43 - 243
Target Start/End: Original strand, 42360614 - 42360811
Alignment:
| Q |
43 |
atgtgtagtttgaataatgatcaacaaagattagatagtacaagtagccatctaacgacctaatgggagcaggtccccatacatccgaataaatattctc |
142 |
Q |
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||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
42360614 |
atgtgtattttgaataatgatcgacaaagattagatagtacaagtagccatctaacgacctaatgggagc---tccccatacatccgaataaatattctt |
42360710 |
T |
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| Q |
143 |
aagaggcctagtgctctctatactagaagaagtaaagggcaatttatgactttttgaggtattacaagagatgcatggattgttgataccgtgttttatt |
242 |
Q |
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|||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
42360711 |
aagaggtctagtgctctctatactagaagaagtaatggacaatttatgactttttgaggtattacaagagatgcatggagtgttgataccgtgttttatt |
42360810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 243
Target Start/End: Original strand, 40115014 - 40115246
Alignment:
| Q |
11 |
gacatcagacttatttttcatgggatataaccatgtgtagtttgaataatgatcaacaaagattagatagtacaagtagccatctaacgacctaatggga |
110 |
Q |
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||||||||| ||||||||||||||| | | ||| | || ||||| ||||||||||||| ||||||||||| ||| | |||||||| ||||||| || |
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| T |
40115014 |
gacatcagatttatttttcatgggaaaaagccaaatatattttgagaaatgatcaacaaatattagatagtataagaaaccatctaaggacctaacaggg |
40115113 |
T |
|
| Q |
111 |
gcaggtccccatacatccgaataaatattctcaagaggcctagtgctctctatactagaagaagtaaagggcaatttatgactttttgaggtattacaag |
210 |
Q |
| |
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|| |||||||||||||| || |||||| ||||||||||||||| ||| ||||| ||| ||| || |||| ||||||||||||||||||||||||| |
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| T |
40115114 |
gctggtccccatacatcagagtaaataatctcaagaggcctagagctggtaatacttgaaatagtgaatggcagcttatgactttttgaggtattacaag |
40115213 |
T |
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| Q |
211 |
agatgcatggattgttgataccgtgttttattt |
243 |
Q |
| |
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||||||||| |||||| || |||||||||| |
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| T |
40115214 |
cgatgcatggtgtgttgagactatgttttattt |
40115246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 9006840 - 9006956
Alignment:
| Q |
11 |
gacatcagacttatttttcatgggatataaccatgtgtagtttgaataatgatcaacaaagattagatagtacaagtagccatctaacgacctaatggga |
110 |
Q |
| |
|
||||||||| ||||||||||| |||||||||| | || || || ||||||| ||||| |||| || || |||||||||||||| |||||||| ||| |
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| T |
9006840 |
gacatcagatttatttttcattggatataacccaatatatttggagaaatgatctacaaatattaagtaatataagtagccatctaaggacctaatagga |
9006939 |
T |
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| Q |
111 |
gcaggtccccatacatc |
127 |
Q |
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||||| ||||||||||| |
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| T |
9006940 |
gcagggccccatacatc |
9006956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 200
Target Start/End: Original strand, 656148 - 656335
Alignment:
| Q |
11 |
gacatcagacttatttttcatgggatataaccatgtgtagtttgaataatgatcaacaaagattagatagtacaagtagccatctaacgacctaatggga |
110 |
Q |
| |
|
|||||| || |||||||||| ||||||||||| | || || || ||||||||||||| ||||||||||| ||||| |||||||| |||||||| ||| |
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| T |
656148 |
gacatctgatttatttttcaatggatataaccaaatatatttcaaaaaatgatcaacaaaaattagatagtataagtaaccatctaatgacctaatagga |
656247 |
T |
|
| Q |
111 |
gcaggtccccatacatccgaataaatattctcaagaggcctagtgctctctatactagaagaagtaaagggcaatttatgactttttgag |
200 |
Q |
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|| || |||||||||| || |||||| ||||||| ||||||||||||| ||||| || ||| || ||||| |||||||||||||| |
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| T |
656248 |
gctgg--cccatacatctgagtaaataatctcaagcggcctagtgctcttaatacttgatatagtgaacggcaacctatgactttttgag |
656335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 127
Target Start/End: Original strand, 24488118 - 24488233
Alignment:
| Q |
12 |
acatcagacttatttttcatgggatataaccatgtgtagtttgaataatgatcaacaaagattagatagtacaagtagccatctaacgacctaatgggag |
111 |
Q |
| |
|
||||| ||||||| |||||| ||||| |||||| || || ||| |||||||||||| ||||| ||||||||| || ||||||| || ||||| |||| |
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| T |
24488118 |
acatctgacttatgtttcattggatacaaccatacatatttggaaaaatgatcaacaatgattaaatagtacaaataaccatctattgatctaataggag |
24488217 |
T |
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| Q |
112 |
caggtccccatacatc |
127 |
Q |
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| T |
24488218 |
ccggcccccaaacatc |
24488233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 127
Target Start/End: Original strand, 24496452 - 24496567
Alignment:
| Q |
12 |
acatcagacttatttttcatgggatataaccatgtgtagtttgaataatgatcaacaaagattagatagtacaagtagccatctaacgacctaatgggag |
111 |
Q |
| |
|
||||| ||||||| |||||| ||||| |||||| || || ||| |||||||||||| ||||| ||||||||| || ||||||| || ||||| |||| |
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| T |
24496452 |
acatctgacttatgtttcattggatacaaccatacatatttggaaaaatgatcaacaatgattaaatagtacaaataaccatctattgatctaataggag |
24496551 |
T |
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| Q |
112 |
caggtccccatacatc |
127 |
Q |
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| || ||||| ||||| |
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| T |
24496552 |
ccggcccccaaacatc |
24496567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 157
Target Start/End: Original strand, 18187961 - 18188107
Alignment:
| Q |
11 |
gacatcagacttatttttcatgggatataaccatgtgtagtttgaataatgatcaacaaagattagatagtacaagtagccatctaacgacctaatggga |
110 |
Q |
| |
|
||||||||||||| |||||| ||||| | ||| |||| || || ||||||||| ||| |||| ||| || | | | |||||||| |||||||| ||| |
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| T |
18187961 |
gacatcagacttaaatttcattggataaagccaaatgtatttggagaaatgatcaataaaaattacataataaacgaaaccatctaaagacctaatagga |
18188060 |
T |
|
| Q |
111 |
gcaggtccccatacatccgaataaatattctcaagaggcctagtgct |
157 |
Q |
| |
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||||| ||| | |||||||||||||| ||||||||| || ||||| |
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| T |
18188061 |
gcagggccctagacatccgaataaatcaactcaagaggtcttgtgct |
18188107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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