View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8601_low_6 (Length: 620)

Name: NF8601_low_6
Description: NF8601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8601_low_6
NF8601_low_6
[»] chr1 (8 HSPs)
chr1 (17-603)||(871827-872422)
chr1 (414-494)||(32327867-32327945)
chr1 (413-503)||(36194119-36194209)
chr1 (415-527)||(42250262-42250377)
chr1 (415-516)||(33432658-33432759)
chr1 (356-384)||(844675-844703)
chr1 (479-527)||(39717427-39717475)
chr1 (356-384)||(40811322-40811350)
[»] chr3 (3 HSPs)
chr3 (367-529)||(38665442-38665604)
chr3 (413-517)||(27512245-27512349)
chr3 (355-384)||(5442466-5442495)
[»] chr8 (2 HSPs)
chr8 (422-529)||(14292338-14292445)
chr8 (356-384)||(6386762-6386790)
[»] scaffold0332 (1 HSPs)
scaffold0332 (414-518)||(722-826)
[»] chr5 (1 HSPs)
chr5 (443-503)||(32812484-32812544)
[»] chr4 (4 HSPs)
chr4 (443-523)||(42584374-42584454)
chr4 (411-517)||(29614894-29615000)
chr4 (444-515)||(44954627-44954698)
chr4 (468-529)||(39433374-39433435)
[»] chr6 (4 HSPs)
chr6 (467-525)||(7624263-7624321)
chr6 (355-384)||(17868021-17868050)
chr6 (355-384)||(17877804-17877833)
chr6 (356-384)||(15277195-15277223)
[»] chr7 (4 HSPs)
chr7 (471-526)||(14100144-14100199)
chr7 (471-526)||(14410161-14410216)
chr7 (355-384)||(10932433-10932462)
chr7 (359-391)||(40753338-40753370)
[»] chr2 (1 HSPs)
chr2 (461-515)||(1319884-1319938)


Alignment Details
Target: chr1 (Bit Score: 442; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 17 - 603
Target Start/End: Complemental strand, 872422 - 871827
Alignment:
Q  17 acatcagcccaaccgagctttgtaaaaatgtgaaaaaggacact-aacaaatattcatgaaactttcagttcataaattatatgacaattgcagcttttt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |    
T  872422 acatcagcccaaccgagctttgtaaaaatgtgaaaaaggacacttaacaaatattcatgaaactttcagttaataaattatatgacaattgcagctttat 872323  T
Q  116 atttaatataccatgatgggcttgctacttgtcagagcatattgtgacatactttcaacacaatcagctatgccaatggaagccttcccnnnnnnnnnnn 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||               
T  872322 atttaatataccatgatgggcttgctacttgtcagagcatattgtgacatactttcaacacaatcagctaggccaatggaagccttcccaaaaacaaaaa 872223  T
Q  216 nngctggtagagttgttgtcctgtagagaga--aaaaaggacgtcaatcaaagcacgtgaaataaaatatcaacctataagcagcatacagaattaaata 313  Q
      |||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  872222 aagctggtagagttgttgtcctgtagagagagaaaaaaggacgtcaatcgaagcacgtgaagtaaaatatcaacctataagcagcatacagaattaaata 872123  T
Q  314 gcaatcaattgttaccacagaatatgtaagaacgtt------gatgtacttagggtgcgtttgatttgctaaaaaataggggactggacaacnnnnnnng 407  Q
    ||||||||||||| ||||||||||||||||||| ||      || |||||||||||||||||||||||||||||||||||||||||||||||       |    
T  872122 gcaatcaattgttcccacagaatatgtaagaacatttgaacagaggtacttagggtgcgtttgatttgctaaaaaataggggactggacaactttttttg 872023  T
Q  408 taacctgtttgatttagaaattggacatgagactagacaaaacaggtagcaaaggactgaacaaaaacaagaattcttgtccctcaccaaaccatgggaa 507  Q
    || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  872022 taccctgtttgatttagaaattggacatgggactagacaaaacaggtagcaaaggactgaacaaaaacaagaattcttgtccctcaccaaaccatgggat 871923  T
Q  508 aactttttgtccagagtacaaaaataccgtatctatttaccaacataaaaagtattatctctctccaatagagttctgtcttgcattgtactattt 603  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  871922 aactttttgtccagagtacaaaaataccctatctatttaccaacataaaaagtattatctctctccaatagagttctgtcttgtattgtactattt 871827  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 414 - 494
Target Start/End: Original strand, 32327867 - 32327945
Alignment:
Q  414 gtttgatttagaaattggacatgagactagacaaaacaggtagcaaaggactgaacaaaaacaagaattcttgtccctcac 494  Q
    |||||||||||||| ||| ||||||||| |||||||||||||||||  |||||||  |||||||||||  |||||||||||    
T  32327867 gtttgatttagaaactggtcatgagactggacaaaacaggtagcaagagactgaatgaaaacaagaat--ttgtccctcac 32327945  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 413 - 503
Target Start/End: Original strand, 36194119 - 36194209
Alignment:
Q  413 tgtttgatttagaaattggacatgagactagacaaaacaggtagcaaaggactgaacaaaaacaagaattcttgtccctcaccaaaccatg 503  Q
    ||||||||||| ||||||| ||||| ||||||||||| || ||||||  |||| ||||||| || ||||| ||||| ||||| ||||||||    
T  36194119 tgtttgatttataaattggtcatgaaactagacaaaatagatagcaagagactaaacaaaaccatgaattattgtctctcactaaaccatg 36194209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 415 - 527
Target Start/End: Complemental strand, 42250377 - 42250262
Alignment:
Q  415 tttgatttagaaattggacatgagactagacaaaacaggtagcaaaggactgaacaaaaacaagaattcttgtccctcaccaaacc---atgggaaaact 511  Q
    ||||||||| ||||||| |||| |||||||||||||||| ||| | |||  | ||||||||   |||||||||||||||| |||||   ||| || ||||    
T  42250377 tttgatttataaattggtcatgggactagacaaaacaggaagctagggatcggacaaaaaccgaaattcttgtccctcactaaaccatgatgagacaact 42250278  T
Q  512 ttttgtccagagtaca 527  Q
    ||||||| ||||||||    
T  42250277 ttttgtctagagtaca 42250262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 516
Target Start/End: Complemental strand, 33432759 - 33432658
Alignment:
Q  415 tttgatttagaaattggacatgagactagacaaaacaggtagcaaaggactgaacaaaaacaagaattcttgtccctcaccaaaccatgggaaaactttt 514  Q
    ||||||||||||||||  ||||  |||||||||||||  | | || ||| |||||||||||||||||   |||| ||||  |||| |||||| |||||||    
T  33432759 tttgatttagaaattgatcatggaactagacaaaacaaatggtaatggattgaacaaaaacaagaatgtgtgtctctcattaaactatgggataactttt 33432660  T
Q  515 tg 516  Q
    ||    
T  33432659 tg 33432658  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 356 - 384
Target Start/End: Original strand, 844675 - 844703
Alignment:
Q  356 cttagggtgcgtttgatttgctaaaaaat 384  Q
    |||||||||||||||||||||||||||||    
T  844675 cttagggtgcgtttgatttgctaaaaaat 844703  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 479 - 527
Target Start/End: Complemental strand, 39717475 - 39717427
Alignment:
Q  479 aattcttgtccctcaccaaaccatgggaaaactttttgtccagagtaca 527  Q
    |||| ||||||||||| |||||||| || ||||||||||| ||||||||    
T  39717475 aatttttgtccctcactaaaccatgagacaactttttgtctagagtaca 39717427  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 356 - 384
Target Start/End: Original strand, 40811322 - 40811350
Alignment:
Q  356 cttagggtgcgtttgatttgctaaaaaat 384  Q
    |||||||||||||||||||||||||||||    
T  40811322 cttagggtgcgtttgatttgctaaaaaat 40811350  T

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Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 367 - 529
Target Start/End: Original strand, 38665442 - 38665604
Alignment:
Q  367 tttgatttgctaaaaaataggggactggacaacnnnnnnngtaacctgtttgatttagaaattggacatgagactag-acaaaacaggtagcaaaggact 465  Q
    ||||||| |||| |||| |||||||||||||||       ||  ||| ||||||||||||| ||| |||| |||| | ||||||||||||||||| ||||    
T  38665442 tttgattggctagaaaacaggggactggacaacagtttttgtcccctttttgatttagaaactggtcatg-gacttggacaaaacaggtagcaaatgact 38665540  T
Q  466 gaacaaaaacaagaattcttgtccctcaccaaaccatgggaaaactttttgtccagagtacaaa 529  Q
    | |||||||||| ||||| |||||||||  ||||||||||| ||||||||||| ||||||||||    
T  38665541 ggacaaaaacaataattcatgtccctcattaaaccatgggacaactttttgtcaagagtacaaa 38665604  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 413 - 517
Target Start/End: Original strand, 27512245 - 27512349
Alignment:
Q  413 tgtttgatttagaaattggacatgagactagacaaaacaggtagcaaaggactgaacaaaaacaagaattcttgtccctcaccaaaccatgggaaaactt 512  Q
    ||||||||||| ||||||  |||| || | |||||||||| |||||| ||||   ||||||||| |||||||| |||||||| ||||||||||| |||||    
T  27512245 tgtttgatttaaaaattgatcatgggattggacaaaacagatagcaagggacaagacaaaaacaggaattcttatccctcactaaaccatgggacaactt 27512344  T
Q  513 tttgt 517  Q
    |||||    
T  27512345 tttgt 27512349  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 384
Target Start/End: Complemental strand, 5442495 - 5442466
Alignment:
Q  355 acttagggtgcgtttgatttgctaaaaaat 384  Q
    ||||||||||||||||||||||||||||||    
T  5442495 acttagggtgcgtttgatttgctaaaaaat 5442466  T

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Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 422 - 529
Target Start/End: Original strand, 14292338 - 14292445
Alignment:
Q  422 tagaaattggacatgagactagacaaaacaggtagcaaaggactgaacaaaaacaagaattcttgtccctcaccaaaccatgggaaaactttttgtccag 521  Q
    |||||||||  |||||||||  ||||||||| |||||| |||||||||| ||||| |||| ||||||| |||  |||||||| || |||||||||| |||    
T  14292338 tagaaattgatcatgagactgaacaaaacagatagcaagggactgaacacaaacatgaatccttgtccatcagtaaaccatgagacaactttttgtgcag 14292437  T
Q  522 agtacaaa 529  Q
    ||||||||    
T  14292438 agtacaaa 14292445  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 356 - 384
Target Start/End: Complemental strand, 6386790 - 6386762
Alignment:
Q  356 cttagggtgcgtttgatttgctaaaaaat 384  Q
    |||||||||||||||||||||||||||||    
T  6386790 cttagggtgcgtttgatttgctaaaaaat 6386762  T

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Target: scaffold0332 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0332
Description:

Target: scaffold0332; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 414 - 518
Target Start/End: Complemental strand, 826 - 722
Alignment:
Q  414 gtttgatttagaaattggacatgagactagacaaaacaggtagcaaaggactgaacaaaaacaagaattcttgtccctcaccaaaccatgggaaaacttt 513  Q
    ||||||||||| ||  || ||||||| | ||||||||| |||||||  ||||  ||||||||| ||||||||||| ||||| ||||||||||| || |||    
T  826 gtttgatttagtaacgggtcatgagagtggacaaaacaagtagcaagagactagacaaaaacatgaattcttgtctctcactaaaccatgggacaatttt 727  T
Q  514 ttgtc 518  Q
    |||||    
T  726 ttgtc 722  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 443 - 503
Target Start/End: Original strand, 32812484 - 32812544
Alignment:
Q  443 gacaaaacaggtagcaaaggactgaacaaaaacaagaattcttgtccctcaccaaaccatg 503  Q
    |||||||||||||||||||||| ||| ||||||| |||||||||||||||||  |||||||    
T  32812484 gacaaaacaggtagcaaaggacggaataaaaacaggaattcttgtccctcacttaaccatg 32812544  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 443 - 523
Target Start/End: Original strand, 42584374 - 42584454
Alignment:
Q  443 gacaaaacaggtagcaaaggactgaacaaaaacaagaattcttgtccctcaccaaaccatgggaaaactttttgtccagag 523  Q
    ||||||||||||||||| ||| | ||| |||||| |||||||||||||||||  |||||||||| ||||||| ||| ||||    
T  42584374 gacaaaacaggtagcaagggattcaacgaaaacatgaattcttgtccctcacttaaccatgggataacttttagtctagag 42584454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 411 - 517
Target Start/End: Original strand, 29614894 - 29615000
Alignment:
Q  411 cctgtttgatttagaaattggacatgagactagacaaaacaggtagcaaaggactgaacaaaaacaagaattcttgtccctcaccaaaccatgggaaaac 510  Q
    ||||||||||||||||||||| ||||  | | ||||||| |||||| || | |||  ||||||||| |||||||  |||||||| ||||||||| | |||    
T  29614894 cctgtttgatttagaaattggtcatggaattggacaaaataggtagtaaggaactagacaaaaacatgaattctcatccctcactaaaccatggtacaac 29614993  T
Q  511 tttttgt 517  Q
    |||||||    
T  29614994 tttttgt 29615000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 515
Target Start/End: Original strand, 44954627 - 44954698
Alignment:
Q  444 acaaaacaggtagcaaaggactgaacaaaaacaagaattcttgtccctcaccaaaccatgggaaaacttttt 515  Q
    |||||| || |||||| |||||  ||||||||||||||| || |||||||| |||| |||| ||||||||||    
T  44954627 acaaaatagatagcaagggactagacaaaaacaagaatttttatccctcactaaacgatggaaaaacttttt 44954698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 468 - 529
Target Start/End: Original strand, 39433374 - 39433435
Alignment:
Q  468 acaaaaacaagaattcttgtccctcaccaaaccatgggaaaactttttgtccagagtacaaa 529  Q
    |||||||||  |||||||||||||||| |||||  | || |||||||| |||||||||||||    
T  39433374 acaaaaacataaattcttgtccctcactaaaccgcgagacaactttttatccagagtacaaa 39433435  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 467 - 525
Target Start/End: Original strand, 7624263 - 7624321
Alignment:
Q  467 aacaaaaacaagaattcttgtccctcaccaaaccatgggaaaactttttgtccagagta 525  Q
    |||||||||||||||||||||||||||| ||| |||| || || |||||||||||||||    
T  7624263 aacaaaaacaagaattcttgtccctcactaaagcatgagacaattttttgtccagagta 7624321  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 384
Target Start/End: Complemental strand, 17868050 - 17868021
Alignment:
Q  355 acttagggtgcgtttgatttgctaaaaaat 384  Q
    ||||||||||||||||||||||||||||||    
T  17868050 acttagggtgcgtttgatttgctaaaaaat 17868021  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 384
Target Start/End: Complemental strand, 17877833 - 17877804
Alignment:
Q  355 acttagggtgcgtttgatttgctaaaaaat 384  Q
    ||||||||||||||||||||||||||||||    
T  17877833 acttagggtgcgtttgatttgctaaaaaat 17877804  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 356 - 384
Target Start/End: Original strand, 15277195 - 15277223
Alignment:
Q  356 cttagggtgcgtttgatttgctaaaaaat 384  Q
    |||||||||||||||||||||||||||||    
T  15277195 cttagggtgcgtttgatttgctaaaaaat 15277223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 471 - 526
Target Start/End: Original strand, 14100144 - 14100199
Alignment:
Q  471 aaaacaagaattcttgtccctcaccaaaccatgggaaaactttttgtccagagtac 526  Q
    |||||| ||||||||||||||| ||||||||||||| |||||||||| ||| ||||    
T  14100144 aaaacatgaattcttgtccctcgccaaaccatgggacaactttttgtacagggtac 14100199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 471 - 526
Target Start/End: Original strand, 14410161 - 14410216
Alignment:
Q  471 aaaacaagaattcttgtccctcaccaaaccatgggaaaactttttgtccagagtac 526  Q
    |||||| ||||||||||||||| ||||||||||||| |||||||||| ||| ||||    
T  14410161 aaaacatgaattcttgtccctcgccaaaccatgggacaactttttgtacagggtac 14410216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 384
Target Start/End: Original strand, 10932433 - 10932462
Alignment:
Q  355 acttagggtgcgtttgatttgctaaaaaat 384  Q
    ||||||||||||||||||||||||||||||    
T  10932433 acttagggtgcgtttgatttgctaaaaaat 10932462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 359 - 391
Target Start/End: Complemental strand, 40753370 - 40753338
Alignment:
Q  359 agggtgcgtttgatttgctaaaaaataggggac 391  Q
    ||||||||||||||||||||||||||| |||||    
T  40753370 agggtgcgtttgatttgctaaaaaataagggac 40753338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 515
Target Start/End: Complemental strand, 1319938 - 1319884
Alignment:
Q  461 ggactgaacaaaaacaagaattcttgtccctcaccaaaccatgggaaaacttttt 515  Q
    |||||| ||||||||| |||||||| |||||||| ||||||||||| ||||||||    
T  1319938 ggactggacaaaaacatgaattcttttccctcactaaaccatgggacaacttttt 1319884  T

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