View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8601_low_7 (Length: 556)
Name: NF8601_low_7
Description: NF8601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8601_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 515; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 17 - 543
Target Start/End: Original strand, 3810827 - 3811353
Alignment:
| Q |
17 |
tcaccctctacttggttggatcctgtattttcttggttcttttgcattttgctcaattgcaattaatatctttcttctaccaatgttaccagttttggta |
116 |
Q |
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| T |
3810827 |
tcaccctctacttggttggatcctgtattttcttggttcttttgcattttgctcaattgcaattaatatctttcttctaccaatgttaccagttttggta |
3810926 |
T |
|
| Q |
117 |
ccttggcttgggattcttggagtcctaatggttatggcatttccttggtatcctgatggaatagtaagagctatgtctgtgtttggctatgcattctgtt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3810927 |
ccttggcttgggattcttggagtcctaatggttatggcatttccttggtatcctgatggaatagtaagagctatgtctgtgtttggctatgcattctgtt |
3811026 |
T |
|
| Q |
217 |
ttgctccatttttgtggatatctttagtgaggattgcgacaggtcttcaactatctctagagagggaagcttttctacctagatttgcagaatgttatcc |
316 |
Q |
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| T |
3811027 |
ttgctccatttttgtggatatctttagtgaggattgtgacaggtcttcaactatctctagagagggaagcttttctacctagatttgcagaatgttatcc |
3811126 |
T |
|
| Q |
317 |
acaatcttggtttaacaagttattttgagatgtatacttacattaaaattgtattcatttgttcacttacattaaattttatcaaatctcacttgtactc |
416 |
Q |
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| T |
3811127 |
acaatcttggtttaacaagttattttgagatgtatacttacattaaaattgtattcatttgttcacttacattaaattttatcaaatctcacttgtactc |
3811226 |
T |
|
| Q |
417 |
attgtctaattattttgttctttttgaaataaataaataaacttgacctctgctctatttgcagagaggttaaaaaacatggtgcaaagggaaaattcat |
516 |
Q |
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| T |
3811227 |
attgtttaattattttgttctttttgaaataaataaataaacttgatctctgctctatttgcagagaggttaaaaaacatggtgcaaagggaaaattcat |
3811326 |
T |
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| Q |
517 |
acattcacattatgtagctatgtgatg |
543 |
Q |
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| T |
3811327 |
acattcacattatgtagctatgtgatg |
3811353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 87 - 211
Target Start/End: Complemental strand, 41672655 - 41672531
Alignment:
| Q |
87 |
tttcttctaccaatgttaccagttttggtaccttggcttgggattcttggagtcctaatggttatggcatttccttggtatcctgatggaatagtaagag |
186 |
Q |
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|||||||| ||| ||||||| ||| || | || ||| |||| ||| ||||||| |||| || ||||| |||||||||||||| ||||| ||||||||| |
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| T |
41672655 |
tttcttcttccagtgttaccggttctgatgccgtggtttggtattattggagttttaattgtcatggcgtttccttggtatccggatggggtagtaagag |
41672556 |
T |
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| Q |
187 |
ctatgtctgtgtttggctatgcatt |
211 |
Q |
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|| | | ||||||||| |||||||| |
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| T |
41672555 |
ctttatgtgtgtttggttatgcatt |
41672531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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