View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8601_low_8 (Length: 550)
Name: NF8601_low_8
Description: NF8601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8601_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 24 - 520
Target Start/End: Original strand, 43637655 - 43638151
Alignment:
| Q |
24 |
ttgccatcatgtaaagggtctacaaataaagagtctctcgttggaagtgcataatgttgacaccgcaaaatcgatccatccagcaaaaccagcttcttga |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
43637655 |
ttgccatcatgtaaagggtctacaaataaagagtctctcgttggaagtgcataatgttgacaccgcaaaatcgatccatccggcaaaaccagcttcttga |
43637754 |
T |
|
| Q |
124 |
gtaacttgaagttgtggtttccaacagagtcgcttacataaattggtccgccagagattgctcgagaagcagcatgaaattcagaacaagcatgatgaga |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43637755 |
gtaacttgaagttgtggtttccaacagagtcgcttacataaattggtccgccagagattgctcgagaagcagcatgaaattcagaacaagcatgatgaga |
43637854 |
T |
|
| Q |
224 |
ttggaacatgtcccaatctggttgtataaaatttcccatccataagctgttataggcacaatgcaccatgtgacatccttgcaaccaatatgtaccattt |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43637855 |
ttggaacatgtcccaatctggttgtataaaatttcccatccataagctgttataggcacaatgcaccatgtgacatccttgcaaccaatatgtaccattt |
43637954 |
T |
|
| Q |
324 |
ggatccccagctgggtccgtgcaccaaaaatcatcacctgcataaattaatgcatcacaacccacaactattgataaaccaatgtgacaataacatgttt |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43637955 |
ggatccccagctgggtccgtgcaccaaaaatcatcacctgcataaattaatgcatcacaacccacaactattgataaaccaatgtgacaataacatgttt |
43638054 |
T |
|
| Q |
424 |
aatcatttataaaatcgtatggtaaaaatcattttatgataaatgcaattcttaaatagataatcgttaattaagatatatgaagtactaacacagt |
520 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
43638055 |
aatcatttataaaatcgtatggtaaaaatcattttatgataaatgcaattcttaaatagatagtcgttaattaagatatattaagtactaacacagt |
43638151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 26 - 358
Target Start/End: Original strand, 34696903 - 34697235
Alignment:
| Q |
26 |
gccatcatgtaaagggtctacaaataaagagtctctcgttggaagtgcataatgttgacaccgcaaaatcgatccatccagcaaaaccagcttcttgagt |
125 |
Q |
| |
|
||||||||||||||||||| |||| || | |||| || || ||||| ||||||||||| ||||| || || ||||| ||||||| || | || || |
|
|
| T |
34696903 |
gccatcatgtaaagggtcttcaaacaagcaatctcgtgtagggagtgcgtaatgttgacaacgcaagatagaaccatcaggcaaaacaagagttttaagc |
34697002 |
T |
|
| Q |
126 |
aacttgaagttgtggtttccaacagagtcgcttacataaattggtccgccagagattgctcgagaagcagcatgaaattcagaacaagcatgatgagatt |
225 |
Q |
| |
|
|||||||| ||||| || || ||| | ||||| |||||||||||||| ||||||| |||| ||| |||||||||||||||| ||||| ||| |||| |
|
|
| T |
34697003 |
aacttgaaattgtgattaccgacacaatcgctaacataaattggtccaccagagacagctctagaggcagcatgaaattcagcacaagggtgagtggatt |
34697102 |
T |
|
| Q |
226 |
ggaacatgtcccaatctggttgtataaaatttcccatccataagctgttataggcacaatgcaccatgtgacatccttgcaaccaatatgtaccatttgg |
325 |
Q |
| |
|
| ||||||||||||||||| || || ||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| | |||||||||||||||||| |
|
|
| T |
34697103 |
gaaacatgtcccaatctgggtgaatgaaatttcccatccataaactgttataggcacaatgtaccatgtgacaaccttggagccaatatgtaccatttgg |
34697202 |
T |
|
| Q |
326 |
atccccagctgggtccgtgcaccaaaaatcatc |
358 |
Q |
| |
|
||| |||| ||| || | ||||| |||||||| |
|
|
| T |
34697203 |
atcaccagatggatcagaacaccagaaatcatc |
34697235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 135 - 363
Target Start/End: Complemental strand, 489068 - 488840
Alignment:
| Q |
135 |
ttgtggtttccaacagagtcgcttacataaattggtccgccagagattgctcgagaagcagcatgaaattcagaacaagcatgatgagattggaacatgt |
234 |
Q |
| |
|
||||| |||||||||| ||| |||| |||||||| || ||||| || |||| |||||| |||||||| ||| ||||| || |||||| ||||| | |
|
|
| T |
489068 |
ttgtgatttccaacagtgtcacttatgtaaattggaccaccagatatggctctagaagctgcatgaaaagcagcacaagggtgtgtagattgaaacatat |
488969 |
T |
|
| Q |
235 |
cccaatctggttgtataaaatttcccatccataagctgttataggcacaatgcaccatgtgacatccttgcaaccaatatgtaccatttggatccccagc |
334 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||| || || |||||||||||||||||||||||||| | ||||||||||||||||||||| ||| |
|
|
| T |
488968 |
cccaatctggttggatgaaatttcccatccataagctattgtatgcacaatgcaccatgtgacatccttgtagccaatatgtaccatttggatcaccata |
488869 |
T |
|
| Q |
335 |
tgggtccgtgcaccaaaaatcatcacctg |
363 |
Q |
| |
|
|||||| |||||||| ||||||||||||| |
|
|
| T |
488868 |
tgggtcagtgcaccagaaatcatcacctg |
488840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 193 - 295
Target Start/End: Original strand, 43562931 - 43563033
Alignment:
| Q |
193 |
cagcatgaaattcagaacaagcatgatgagattggaacatgtcccaatctggttgtataaaatttcccatccataagctgttataggcacaatgcaccat |
292 |
Q |
| |
|
|||||||||||| || |||| |||| | ||||||||||||||||||||| ||| | || | | ||||||||||||||| || |||| |||||| | ||| |
|
|
| T |
43562931 |
cagcatgaaatttagcacaaacatggttagattggaacatgtcccaatcaggtcgaatcatttgtcccatccataagctattgtaggaacaatgaatcat |
43563030 |
T |
|
| Q |
293 |
gtg |
295 |
Q |
| |
|
||| |
|
|
| T |
43563031 |
gtg |
43563033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 295
Target Start/End: Original strand, 36430808 - 36430881
Alignment:
| Q |
222 |
gattggaacatgtcccaatctggttgtataaaatttcccatccataagctgttataggcacaatgcaccatgtg |
295 |
Q |
| |
|
|||||||||||||||||||| ||||| || | | ||||||||||||||| || |||| |||||| | |||||| |
|
|
| T |
36430808 |
gattggaacatgtcccaatcaggttgaatcatttgtcccatccataagctattgtaggaacaatgaatcatgtg |
36430881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University