View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8601_low_9 (Length: 518)
Name: NF8601_low_9
Description: NF8601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8601_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 8 - 510
Target Start/End: Complemental strand, 13075819 - 13075317
Alignment:
| Q |
8 |
ggacatcaatcaattcgaaattcaaattgatacttataagaggttgaattgttgcgagacaaatgtcggggtaatctgtgtgcatacatatttgatcaat |
107 |
Q |
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| T |
13075819 |
ggacatcaatcaattcgaaattcaaattgatacttataagaggttgaattgttgcgagacaaatgtcggggtaatctgtgtgcatacatatttgatcaat |
13075720 |
T |
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| Q |
108 |
tcctagggtgctttgtttaattgattcaaatgggtgttgaggcattgtcatggggtctatgcttatttcccctttgagaaggtcggagaatgcatttttg |
207 |
Q |
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| T |
13075719 |
tcctagggtgctttgtttaattgattcaaatgggtgttgaggcattgtcatggggtctatgcttatttcccctttgagaaggtcggagaatgcatttttg |
13075620 |
T |
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| Q |
208 |
aaggaagctgaatggccaaatgcttgttgttctggaactggttctggttttgacggtgcttgtgcttgcgcttgtggaattaagagcgagtcgaaggatg |
307 |
Q |
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| T |
13075619 |
aaggaagctgaatggccaaatgcttgttgttctggacctggttctggtttcgacggtgcttgtgcttgcgcttgtggaattaagagcgagtcgaaggatg |
13075520 |
T |
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| Q |
308 |
cttctgaagaatgggtcggaggatgcgccgtgtgatgactagaatgggtcggaggatgttccatgtgatgatgacctgaagtgtgctgtttttctatgtg |
407 |
Q |
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| T |
13075519 |
cttctgaagaatgggtcggaggatgcgccgtgtgatgactagaatgggtcggaggatgttccatgtgatgatgacctgaagtgtgctgtttttctatgtg |
13075420 |
T |
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| Q |
408 |
taatgttgtgtcatggaatatgtgagccgtgcatttttctagcgcaaaacatattaggattatgtagaaaattttgaggttaatgttgttcttgttgttg |
507 |
Q |
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| T |
13075419 |
taatgttgtgtcatggaatatgtgagccgtgcatttttctagtgcaaaacatattaggattatgtagaaaattttgaggttaatgttgttcttgttgttg |
13075320 |
T |
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| Q |
508 |
atg |
510 |
Q |
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| T |
13075319 |
atg |
13075317 |
T |
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