View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8602_low_1 (Length: 305)
Name: NF8602_low_1
Description: NF8602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8602_low_1 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 33 - 305
Target Start/End: Original strand, 8277982 - 8278253
Alignment:
| Q |
33 |
agaatttgtaacttgattgggtggaccagctttgttttttgaagtcagagtattcagggcattaaagcgattggaggcttttggcttaacgttttttgtg |
132 |
Q |
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| T |
8277982 |
agaatttgtaacttaattaggtggaccaactttgttttttgaagtcaaagtattcagggcattaaagcgattggaggctttttgcttaacagtttttgtg |
8278081 |
T |
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| Q |
133 |
gtaaatgcggtagggctatttggaattttcttttttctagtgacgagcagcgaatcaccatgcaattcattattttcaccatcattgctaattattgtgt |
232 |
Q |
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| T |
8278082 |
gtaaatgagatggggctatttggaattttcttttttctagtgacgagcagccaatcaccatgcagttcattattttcaccatcaatgctaattattgtgt |
8278181 |
T |
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| Q |
233 |
cattatttgctgatgattcttgaggaaaaatagtaactgccttaccgttttgggtcaccgaaattgaatgcgt |
305 |
Q |
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| T |
8278182 |
cattatttgctgatgatt-ttgaggaaaaatagtaactgtcttaccgttttgggtcaccggaattgaatgcgt |
8278253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 33 - 305
Target Start/End: Original strand, 8306791 - 8307062
Alignment:
| Q |
33 |
agaatttgtaacttgattgggtggaccagctttgttttttgaagtcagagtattcagggcattaaagcgattggaggcttttggcttaacgttttttgtg |
132 |
Q |
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| T |
8306791 |
agaatttgtaacttaattaggtggaccaactttgttttttgaagtcaaagtattcagggcattaaagcgattggaggctttttgcttaacagtttttgtg |
8306890 |
T |
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| Q |
133 |
gtaaatgcggtagggctatttggaattttcttttttctagtgacgagcagcgaatcaccatgcaattcattattttcaccatcattgctaattattgtgt |
232 |
Q |
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| T |
8306891 |
gtaaatgagatggggctatttggaattttcttttttctagtgacgagcagccaatcaccatacagttcattattttcaccatcaatgctaattattgtgt |
8306990 |
T |
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| Q |
233 |
cattatttgctgatgattcttgaggaaaaatagtaactgccttaccgttttgggtcaccgaaattgaatgcgt |
305 |
Q |
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| T |
8306991 |
cattatttgctgatgatt-ttgaggaaaaatagtaactgtcttaccgttttgggtcaccggaattgaatgcgt |
8307062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 161 - 283
Target Start/End: Complemental strand, 7811374 - 7811252
Alignment:
| Q |
161 |
tcttttttctagtgacgagcagcgaatcaccatgcaattcattattttcaccatcattgctaattattgtgtcattatttgctgatgattcttgaggaaa |
260 |
Q |
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| T |
7811374 |
tcttttttctagtaacaagcaaccaatcaccatgcagctcattatttccctcatcattgctaattattttgtcattatgtgctgatgatttattaggaaa |
7811275 |
T |
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| Q |
261 |
aatagtaactgccttaccgtttt |
283 |
Q |
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| T |
7811274 |
aatagaaactgccttaccgtttt |
7811252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 281
Target Start/End: Original strand, 35137803 - 35137923
Alignment:
| Q |
161 |
tcttttttctagtgacgagcagcgaatcaccatgcaattcattattttcaccatcattgctaattattgtgtcattatttgctgatgattcttgaggaaa |
260 |
Q |
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|||||||||| || || || ||| |||||||||| | || | || ||| |||||||| |||||||||||| ||||||| ||| |||||| ||||| | | |
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| T |
35137803 |
tcttttttcttgtaacaagaagccaatcaccatgaaggtcttgatgttctccatcattactaattattgtgccattattggctaatgattgttgagaaga |
35137902 |
T |
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| Q |
261 |
aatagtaactgccttaccgtt |
281 |
Q |
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| T |
35137903 |
aaaagaaactgccgtaccgtt |
35137923 |
T |
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