View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8602_low_10 (Length: 218)

Name: NF8602_low_10
Description: NF8602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8602_low_10
NF8602_low_10
[»] chr2 (2 HSPs)
chr2 (68-202)||(30266566-30266700)
chr2 (135-165)||(9919050-9919080)
[»] chr1 (4 HSPs)
chr1 (68-202)||(23732584-23732725)
chr1 (125-165)||(29843003-29843042)
chr1 (125-165)||(51969450-51969489)
chr1 (125-165)||(42680300-42680339)
[»] chr5 (3 HSPs)
chr5 (98-175)||(4428148-4428225)
chr5 (135-165)||(12421278-12421308)
chr5 (125-165)||(12590593-12590632)
[»] scaffold0045 (1 HSPs)
scaffold0045 (125-165)||(17096-17135)
[»] chr8 (4 HSPs)
chr8 (125-165)||(44387225-44387264)
chr8 (125-165)||(45437200-45437239)
chr8 (125-164)||(29622824-29622862)
chr8 (135-165)||(527968-527998)
[»] chr7 (1 HSPs)
chr7 (125-165)||(3793405-3793444)
[»] chr6 (3 HSPs)
chr6 (125-165)||(25531065-25531104)
chr6 (125-165)||(28194648-28194687)
chr6 (125-165)||(35134691-35134730)
[»] chr4 (3 HSPs)
chr4 (125-165)||(576686-576725)
chr4 (125-165)||(35714430-35714469)
chr4 (135-165)||(35710122-35710152)
[»] chr3 (2 HSPs)
chr3 (125-165)||(22475568-22475607)
chr3 (125-165)||(40830156-40830195)


Alignment Details
Target: chr2 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 68 - 202
Target Start/End: Original strand, 30266566 - 30266700
Alignment:
Q  68 aattctctctttctgtgatacttttcttccttctctctatccacaaggtccctcattgttcttctgtttcctttctttcctctccctcaatttaggtttt 167  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30266566 aattctctctttctgtgatacttttctttcttctctctatccacaaggtccctcattgttcttctgtttcctttctttcctctccctcaatttaggtttt 30266665  T
Q  168 atttgaaagacaaattacaaatcataacagttctt 202  Q
    |||||||||||||||||||||||||||||||||||    
T  30266666 atttgaaagacaaattacaaatcataacagttctt 30266700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 165
Target Start/End: Complemental strand, 9919080 - 9919050
Alignment:
Q  135 ttcctttctttcctctccctcaatttaggtt 165  Q
    |||||||||||||||||||||||||||||||    
T  9919080 ttcctttctttcctctccctcaatttaggtt 9919050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 7e-45; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 68 - 202
Target Start/End: Complemental strand, 23732725 - 23732584
Alignment:
Q  68 aattctctctttctgtgatacttttcttcctt-------ctctctatccacaaggtccctcattgttcttctgtttcctttctttcctctccctcaattt 160  Q
    |||||||||||| |||||||||||||||||||       ||||| ||||||||||| |||  ||||| ||||||||||||||||||||||||||||||||    
T  23732725 aattctctctttttgtgatacttttcttccttgatttttctctcaatccacaaggttccttgttgtttttctgtttcctttctttcctctccctcaattt 23732626  T
Q  161 aggttttatttgaaagacaaattacaaatcataacagttctt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  23732625 aggttttatttgaaagacaaattacaaatcataacagttctt 23732584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 165
Target Start/End: Complemental strand, 29843042 - 29843003
Alignment:
Q  125 gttcttctgtttcctttctttcctctccctcaatttaggtt 165  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  29843042 gttcttctgtt-cctttctttcctctccctcaatttaggtt 29843003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 165
Target Start/End: Complemental strand, 51969489 - 51969450
Alignment:
Q  125 gttcttctgtttcctttctttcctctccctcaatttaggtt 165  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  51969489 gttcttctgtt-cctttctttcctctccctcaatttaggtt 51969450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 165
Target Start/End: Original strand, 42680300 - 42680339
Alignment:
Q  125 gttcttctgtttcctttctttcctctccctcaatttaggtt 165  Q
    ||||||||||| |||||| ||||||||||||||||||||||    
T  42680300 gttcttctgtt-cctttcattcctctccctcaatttaggtt 42680339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 3e-22; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 98 - 175
Target Start/End: Original strand, 4428148 - 4428225
Alignment:
Q  98 ttctctctatccacaaggtccctcattgttcttctgtttcctttctttcctctccctcaatttaggttttatttgaaa 175  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||| ||| ||||    
T  4428148 ttctctccatccacaaggtccctcattgttcttctatttcctttctttcctctctctcaatttaagtttcattagaaa 4428225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 165
Target Start/End: Complemental strand, 12421308 - 12421278
Alignment:
Q  135 ttcctttctttcctctccctcaatttaggtt 165  Q
    |||||||||||||||||||||||||||||||    
T  12421308 ttcctttctttcctctccctcaatttaggtt 12421278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 165
Target Start/End: Complemental strand, 12590632 - 12590593
Alignment:
Q  125 gttcttctgtttcctttctttcctctccctcaatttaggtt 165  Q
    ||||||||||| |||||| ||||||||||||||||||||||    
T  12590632 gttcttctgtt-cctttcattcctctccctcaatttaggtt 12590593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 165
Target Start/End: Complemental strand, 17135 - 17096
Alignment:
Q  125 gttcttctgtttcctttctttcctctccctcaatttaggtt 165  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  17135 gttcttctgtttc-tttctttcctctccctcaatttaggtt 17096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 165
Target Start/End: Complemental strand, 44387264 - 44387225
Alignment:
Q  125 gttcttctgtttcctttctttcctctccctcaatttaggtt 165  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  44387264 gttcttctgtt-cctttctttcctctccctcaatttaggtt 44387225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 165
Target Start/End: Original strand, 45437200 - 45437239
Alignment:
Q  125 gttcttctgtttcctttctttcctctccctcaatttaggtt 165  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  45437200 gttcttctgtt-cctttctttcctctccctcaatttaggtt 45437239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 164
Target Start/End: Complemental strand, 29622862 - 29622824
Alignment:
Q  125 gttcttctgtttcctttctttcctctccctcaatttaggt 164  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  29622862 gttcttctgtt-cctttctttcctctccctcaatttaggt 29622824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 165
Target Start/End: Original strand, 527968 - 527998
Alignment:
Q  135 ttcctttctttcctctccctcaatttaggtt 165  Q
    |||||||||||||||||||||||||||||||    
T  527968 ttcctttctttcctctccctcaatttaggtt 527998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 165
Target Start/End: Original strand, 3793405 - 3793444
Alignment:
Q  125 gttcttctgtttcctttctttcctctccctcaatttaggtt 165  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  3793405 gttcttctgtt-cctttctttcctctccctcaatttaggtt 3793444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 165
Target Start/End: Original strand, 25531065 - 25531104
Alignment:
Q  125 gttcttctgtttcctttctttcctctccctcaatttaggtt 165  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  25531065 gttcttctgtt-cctttctttcctctccctcaatttaggtt 25531104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 165
Target Start/End: Original strand, 28194648 - 28194687
Alignment:
Q  125 gttcttctgtttcctttctttcctctccctcaatttaggtt 165  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  28194648 gttcttctgtt-cctttctttcctctccctcaatttaggtt 28194687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 165
Target Start/End: Original strand, 35134691 - 35134730
Alignment:
Q  125 gttcttctgtttcctttctttcctctccctcaatttaggtt 165  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  35134691 gttcttctgtt-cctttctttcctctccctcaatttaggtt 35134730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 165
Target Start/End: Complemental strand, 576725 - 576686
Alignment:
Q  125 gttcttctgtttcctttctttcctctccctcaatttaggtt 165  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  576725 gttcttctgtt-cctttctttcctctccctcaatttaggtt 576686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 165
Target Start/End: Complemental strand, 35714469 - 35714430
Alignment:
Q  125 gttcttctgtttcctttctttcctctccctcaatttaggtt 165  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  35714469 gttcttctgtt-cctttctttcctctccctcaatttaggtt 35714430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 165
Target Start/End: Complemental strand, 35710152 - 35710122
Alignment:
Q  135 ttcctttctttcctctccctcaatttaggtt 165  Q
    |||||||||||||||||||||||||||||||    
T  35710152 ttcctttctttcctctccctcaatttaggtt 35710122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 165
Target Start/End: Original strand, 22475568 - 22475607
Alignment:
Q  125 gttcttctgtttcctttctttcctctccctcaatttaggtt 165  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  22475568 gttcttctgtt-cctttctttcctctccctcaatttaggtt 22475607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 165
Target Start/End: Complemental strand, 40830195 - 40830156
Alignment:
Q  125 gttcttctgtttcctttctttcctctccctcaatttaggtt 165  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  40830195 gttcttctgtt-cctttctttcctctccctcaatttaggtt 40830156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University