View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8602_low_3 (Length: 249)
Name: NF8602_low_3
Description: NF8602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8602_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 8233481 - 8233716
Alignment:
| Q |
1 |
aaagattcataaacacgagcaagctcatttgggtctgaatccacatcaataccaaagtgtgtttcaaaaaccctcaagctcctgagctccttcaacatct |
100 |
Q |
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| T |
8233481 |
aaagattcataaacacgagcaagctcatttgggtctgaaaccacatcaataccaaagtgtgtttcaaaaaccctcaagctccggagctccttcaacatct |
8233580 |
T |
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| Q |
101 |
cttcataggagagaagaccgtcgttgtttgtgtcgaggcgagcgaaccgatttcctaccgagctattaaatgcttcttcatcttcaaggaagtggacaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8233581 |
cttcataggagagaagaccgtcgttgtttgtgtcgaggcgagcgaaccgatttcctaccgagctattaaatgcttcttcatcttcaaggaagtggacaat |
8233680 |
T |
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| Q |
201 |
tgtggcaccatccaaaatttctacactcatctttct |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
8233681 |
tgtggcaccatccaaaatttctacactcatctttct |
8233716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 8236828 - 8237065
Alignment:
| Q |
1 |
aaagattcataaacacgagcaagctcatttgggtctgaatccacatcaataccaaagtgtgtttcaaaaaccctcaagctcctgagctccttcaacatct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
8236828 |
aaagattcataaacacgagcaagctcatttgggtctgaatccacatcaataccaaagtgtgtttcaaaaatcctcaagctccggagctccttcaacatct |
8236927 |
T |
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| Q |
101 |
cttcataggagagaagaccgtcgttgtttgtgtcgaggcgagcgaaccgatttcctaccgagctattaaatgcttcttcatcttcaaggaagtggacaat |
200 |
Q |
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| T |
8236928 |
cttcataggagagaagaccgtcgttgtttgtgtcgaggcgagcgaaccgatttcctaccgagctattaaatgcttcttcatcttcaaggaagtggacaat |
8237027 |
T |
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| Q |
201 |
tgtggcaccatccaaaatttctacactcatctttctct |
238 |
Q |
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| T |
8237028 |
tgtggcaccatccaaaatttccacactcatttttctct |
8237065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 7 - 235
Target Start/End: Original strand, 8223726 - 8223954
Alignment:
| Q |
7 |
tcataaacacgagcaagctcatttgggtctgaatccacatcaataccaaagtgtgtttcaaaaaccctcaagctcctgagctccttcaacatctcttcat |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8223726 |
tcataaacacgagcaagctcatttgggtctgaatccacatcaataccaaagtgtgtttcaaaaaccctcaagctcctgagctccttcaacatctcatcat |
8223825 |
T |
|
| Q |
107 |
aggagagaagaccgtcgttgtttgtgtcgaggcgagcgaaccgatttcctaccgagctattaaatgcttcttcatcttcaaggaagtggacaattgtggc |
206 |
Q |
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| T |
8223826 |
aggagagcagaccatccttatttgtgtcgagccgagcaaaccgatttcctaccgagctattaaatgcttcttcatcttcaaggaaatggacaattgtggc |
8223925 |
T |
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| Q |
207 |
accatccaaaatttctacactcatctttc |
235 |
Q |
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| T |
8223926 |
accatccaaaatttctacactcatctttc |
8223954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 78 - 237
Target Start/End: Original strand, 8239872 - 8240031
Alignment:
| Q |
78 |
gctcctgagctccttcaacatctcttcataggagagaagaccgtcgttgtttgtgtcgaggcgagcgaaccgatttcctaccgagctattaaatgcttct |
177 |
Q |
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|||||||||||||||||||||||| ||||| ||||| ||||| || || ||||||||||| ||||| ||| |||||||||| ||||||||||| |||||| |
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| T |
8239872 |
gctcctgagctccttcaacatctcatcataagagagcagaccatccttatttgtgtcgagccgagcaaactgatttcctactgagctattaaacgcttct |
8239971 |
T |
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| Q |
178 |
tcatcttcaaggaagtggacaattgtggcaccatccaaaatttctacactcatctttctc |
237 |
Q |
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| T |
8239972 |
tcatcttcaaggaagtggacaattgtggcaccatccaaaatttctacactcatctttctc |
8240031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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