View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8602_low_5 (Length: 239)
Name: NF8602_low_5
Description: NF8602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8602_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 30855810 - 30856046
Alignment:
| Q |
1 |
catcaatgatgactttttcttttgttacgcaatgatgatttgtttgattaatgacaaaatagtatacttttatattagaataaaatatggaattataatc |
100 |
Q |
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| T |
30855810 |
catcaatgatgactttttcttttgttacgcaatgatgatttgtttgattaatgacaaa-tggtacacttttatattagaataaaatatggaattataatc |
30855908 |
T |
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| Q |
101 |
taaatgatcaataattgacgacaagacannnnnnngtttaatcttaatttttgcagatggacttttttaaaagacaaatgttagtatattaatgtgggat |
200 |
Q |
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| T |
30855909 |
taaatgatcaataattgacgacaagacatttttttgtttaatcttaatttttgcagacggacttttttaaaagacaaatgttagtatgttaatgtgggat |
30856008 |
T |
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| Q |
201 |
aatgttatgttgtgggttacactccttaacttctctat |
238 |
Q |
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| T |
30856009 |
aatgttatgttgtgggtttcactccttaacttctctat |
30856046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 111
Target Start/End: Original strand, 30842392 - 30842440
Alignment:
| Q |
62 |
gtatacttttatattagaataaaatatggaattataatctaaatgatcaa |
111 |
Q |
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| T |
30842392 |
gtatacttttat-ttagaataaaatctagaattgtaatctaaatgatcaa |
30842440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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