View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8603_high_15 (Length: 247)

Name: NF8603_high_15
Description: NF8603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8603_high_15
NF8603_high_15
[»] chr8 (3 HSPs)
chr8 (18-247)||(31506796-31507017)
chr8 (26-123)||(31499693-31499790)
chr8 (199-245)||(31499828-31499874)


Alignment Details
Target: chr8 (Bit Score: 156; Significance: 5e-83; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 31506796 - 31507017
Alignment:
Q  18 atcaattaataaagaccggcacagtttggactaattggaaattgttagccacttgctgcatattaaaatataatatgttgctttcaaaatactcttgtgg 117  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |    
T  31506796 atcaattaataaaggccggcacagtttggactaattagaaattgttagccacttgcagcatattaaaatataatctgttgctttcaaaatactcttgtag 31506895  T
Q  118 aataaaatgtgtaatattaagtctttggttaggaattgatttaattcattcattcaca----cacgagatcagatatgtgtgtaagatctttcgaaagat 213  Q
    ||||            ||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||    
T  31506896 aata------------ttaagtctttggttaggaattgatttaattcattcattcacacacacacgagatcagatatgtgtgtaagatctttcgaaagat 31506983  T
Q  214 accaacccttgtcttgtaataaggacaaccatac 247  Q
    ||||||||||||||||||||||||||||||||||    
T  31506984 accaacccttgtcttgtaataaggacaaccatac 31507017  T

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Target: chr8; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 26 - 123
Target Start/End: Original strand, 31499693 - 31499790
Alignment:
Q  26 ataaagaccggcacagtttggactaattggaaattgttagccacttgctgcatattaaaatataatatgttgctttcaaaatactcttgtggaataaa 123  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||| || |||||||||    
T  31499693 ataaaggccggcacagtttggactaattggaaattgttagccacttgcagcatattaaaatataatctgttgctttaaaaatacttttatggaataaa 31499790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 199 - 245
Target Start/End: Original strand, 31499828 - 31499874
Alignment:
Q  199 gatctttcgaaagataccaacccttgtcttgtaataaggacaaccat 245  Q
    |||||||||||||| ||||| ||||||||||||||||| ||||||||    
T  31499828 gatctttcgaaagagaccaatccttgtcttgtaataagaacaaccat 31499874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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