View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8603_high_3 (Length: 505)
Name: NF8603_high_3
Description: NF8603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8603_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 425; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 19 - 491
Target Start/End: Original strand, 45545700 - 45546173
Alignment:
| Q |
19 |
cttgagaatcttcctccaagtctatttgcctctccaaattggcctcacgtttctctaccttatcttccagagcaaatgtttcggccttgtcggtggtttc |
118 |
Q |
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| T |
45545700 |
cttgagaatcttcctccaagtctatttgcctctccaaattggcctcacgtttctctaccttatcttccagaacaaatgtttcggccttgtcggtggtttc |
45545799 |
T |
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| Q |
119 |
agtggttgaagaaacaccttcaactagtggagcatgatgaggttcttgtcctgtaaattttgtaccttcaaaaccaattcctgaatttcctaaattttca |
218 |
Q |
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| T |
45545800 |
agtggttgaagaaacaccttcaactagtggagcatgatgaggttcttgtcctgtaaattttgtaccttcaaaaccaattcctgaatttcctaaattttca |
45545899 |
T |
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| Q |
219 |
actttctcagattcaggtgtaggcgtagcactcttaacatcttcactgtcataacctgtacaacatccaaatacaaaatgtttcagaata-tttttgtag |
317 |
Q |
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| T |
45545900 |
actttctcagattcaggtgtaggcgtagcactcttaacatcttcactgtcataatctgtacaacatccaaatacaaaatgtttcagaatattttttgtag |
45545999 |
T |
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| Q |
318 |
aatgtttttaaattaagtatctaaaacctgtgtagcaccggaactttatattgaagatgtgtcaggtgtgtaacacagacacacgccaccgggacataat |
417 |
Q |
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| T |
45546000 |
aatgtttttaaattaagtatctaaaacctgtgtagcaccggaactttatattgaagatgtgtcaggtgtgtaacacagacacacgccaccgggacatatt |
45546099 |
T |
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| Q |
418 |
attacgttcaannnnnnnctatttctcaaattattaccggtgtctagtcctatatcagtttctagtctgatgtc |
491 |
Q |
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| T |
45546100 |
attacgttcaatttttttccatttctcaaattattaccggtgtctagtcctatatcagtgtctagtctgatgtc |
45546173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 180 - 289
Target Start/End: Original strand, 45551094 - 45551209
Alignment:
| Q |
180 |
gtaccttcaaaaccaattcctgaatttcctaaattttcaactttctcagattc------aggtgtaggcgtagcactcttaacatcttcactgtcataac |
273 |
Q |
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| T |
45551094 |
gtaccttcaatatcaattcctgaatttcctaaattttcatcttgctcggatgttggtgtaggtgtaggtgtagcacttttgacatcttcactgtcataaa |
45551193 |
T |
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| Q |
274 |
ctgtacaacatccaaa |
289 |
Q |
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| T |
45551194 |
ctgtacaacatccaaa |
45551209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 399
Target Start/End: Original strand, 45551291 - 45551359
Alignment:
| Q |
331 |
taagtatctaaaacctgtgtagcaccggaactttatattgaagatgtgtcaggtgtgtaacacagacac |
399 |
Q |
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| T |
45551291 |
taagtatctaaaacctatgtagtactgacattttagattgaagatgtgtctggtgtgtgacacagacac |
45551359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 45550927 - 45550971
Alignment:
| Q |
19 |
cttgagaatcttcctccaagtctatttgcctctccaaattggcct |
63 |
Q |
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| T |
45550927 |
cttgagaatcttcctccaagactgttggcgtctccaaattggcct |
45550971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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