View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8603_high_6 (Length: 385)

Name: NF8603_high_6
Description: NF8603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8603_high_6
NF8603_high_6
[»] chr5 (3 HSPs)
chr5 (1-369)||(9473944-9474310)
chr5 (148-201)||(20039772-20039825)
chr5 (136-182)||(7196565-7196611)
[»] chr8 (3 HSPs)
chr8 (97-181)||(26855644-26855727)
chr8 (148-217)||(26883697-26883766)
chr8 (239-271)||(7142515-7142547)
[»] chr3 (1 HSPs)
chr3 (157-209)||(4568877-4568929)
[»] chr1 (1 HSPs)
chr1 (133-262)||(12809455-12809582)
[»] chr6 (1 HSPs)
chr6 (240-273)||(11077001-11077034)
[»] chr2 (1 HSPs)
chr2 (237-265)||(7706470-7706498)


Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 9473944 - 9474310
Alignment:
Q  1 ataatccttagatcatatttgatataagacttgcattaatccaacgaaaaggtagaggagattcgaagaattttaatcgcgtttaaaatatgaataaaaa 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  9473944 ataatccttatatcatatttgatataagacttgcattaatccaacgaaaaggtagaggagattcgaagaattttaatcgcgtttaaaatatgaataaaa- 9474042  T
Q  101 actcatttacttttcatcgtaatcaaacatcttttcaaactcccctcaatttatagttttaaattataagtttagtaaattgcctggttgaaaacaacaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  9474043 actcatttacttttcatcgtaatcaaacatcttttcaaactcccttcaatttatggttttaaattataagtttagtaaattgcctggttgaaaacaacaa 9474142  T
Q  201 ttcatgtggagacgatatcttgttgttgtgttacatgaaacagtttggtgcacttgtcaaatttatcatcaaggagacatgcaatccgattgcaagacat 300  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||    
T  9474143 ttcatgtggagacgatatcttattgttgtgttacatgaaacagtttggtgcacctgtcaaatttatcatcaaggagacatgcaacccgattgc-agacat 9474241  T
Q  301 gaactcatggttaggccgcatctggacaatagtcattgggttgctaaccattggccatttggagcagtg 369  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||    
T  9474242 gaactcatggttaggccgcatctagacaatagtcattgggtttctaaccattggtcatttggagcagtg 9474310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 201
Target Start/End: Original strand, 20039772 - 20039825
Alignment:
Q  148 aatttatagttttaaattataagtttagtaaattgcctggttgaaaacaacaat 201  Q
    ||||||||||||| ||||||||||||||||||||||||  | ||||||||||||    
T  20039772 aatttatagtttttaattataagtttagtaaattgcctaatagaaaacaacaat 20039825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 182
Target Start/End: Original strand, 7196565 - 7196611
Alignment:
Q  136 caaactcccctcaatttatagttttaaattataagtttagtaaattg 182  Q
    |||| ||||| |||||||||||||| || ||||||||||||||||||    
T  7196565 caaattccccccaatttatagtttttaaatataagtttagtaaattg 7196611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 97 - 181
Target Start/End: Original strand, 26855644 - 26855727
Alignment:
Q  97 aaaaactcatttacttttcatcgtaatcaaacatcttttcaaactcccctcaatttatagttttaaattataagtttagtaaatt 181  Q
    ||||| ||||||||||| ||| | |||||||||   ||||||| |||||| |||||||||||||||| ||||||||| |||||||    
T  26855644 aaaaattcatttactttgcattgcaatcaaacaatctttcaaattcccct-aatttatagttttaaagtataagttttgtaaatt 26855727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 217
Target Start/End: Original strand, 26883697 - 26883766
Alignment:
Q  148 aatttatagttttaaattataagtttagtaaattgcctggttgaaaacaacaattcatgtggagacgata 217  Q
    ||||||||||||| || || ||||||||||||||  ||| | ||||| |||||| |||||||||||||||    
T  26883697 aatttatagtttttaaataaaagtttagtaaattttctgttagaaaataacaatccatgtggagacgata 26883766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 271
Target Start/End: Complemental strand, 7142547 - 7142515
Alignment:
Q  239 aacagtttggtgcacttgtcaaatttatcatca 271  Q
    |||||||||||||||||||||||||| ||||||    
T  7142547 aacagtttggtgcacttgtcaaatttgtcatca 7142515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 4568929 - 4568877
Alignment:
Q  157 ttttaaattataagtttagtaaattgcctggttgaaaacaacaattcatgtgg 209  Q
    |||| ||||||||||||| |||||||||| ||||||||||||||| |||||||    
T  4568929 tttttaattataagtttaataaattgcctagttgaaaacaacaatccatgtgg 4568877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 133 - 262
Target Start/End: Complemental strand, 12809582 - 12809455
Alignment:
Q  133 tttcaaactcccctcaatttatagttttaaattataagtttagtaaattgcctggttgaaaacaacaattcatgtggagacgatatcttgttgttgtgtt 232  Q
    |||||||||||| ||||||||||||||| ||| ||||||||| || ||||| | || | ||||||||||  ||||||||| |||| ||| ||  | | ||    
T  12809582 tttcaaactccc-tcaatttatagtttttaatcataagtttattatattgcatagtag-aaacaacaatcaatgtggagatgataacttattactttatt 12809485  T
Q  233 acatgaaacagtttggtgcacttgtcaaat 262  Q
    || |||||| ||| |||||||||| |||||    
T  12809484 acttgaaactgttaggtgcacttgccaaat 12809455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 273
Target Start/End: Original strand, 11077001 - 11077034
Alignment:
Q  240 acagtttggtgcacttgtcaaatttatcatcaag 273  Q
    ||||||||||||||||| ||||||||||||||||    
T  11077001 acagtttggtgcacttgccaaatttatcatcaag 11077034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 265
Target Start/End: Complemental strand, 7706498 - 7706470
Alignment:
Q  237 gaaacagtttggtgcacttgtcaaattta 265  Q
    |||||||||||||||||||||||||||||    
T  7706498 gaaacagtttggtgcacttgtcaaattta 7706470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University