View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8603_low_10 (Length: 368)
Name: NF8603_low_10
Description: NF8603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8603_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 20 - 355
Target Start/End: Original strand, 4272272 - 4272607
Alignment:
| Q |
20 |
agttggatgatttgcagcctctataataaattttgctttcacatcattagcattttcccttcaagaaacaatagatgaagttgaaattacaccaacaatt |
119 |
Q |
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| T |
4272272 |
agttggatgatttgcagcctctataataaattttgctttcacatcattagcattttcccttcaagaaacaatagatgaagttgaaattacaccaacaatt |
4272371 |
T |
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| Q |
120 |
tattatttattttaacaatgatgatttataaactaaggtgacttagataaaacatacttgttgagaacacctcccaaagcacatggaatgagaacatcac |
219 |
Q |
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| T |
4272372 |
tattatttattttaacaatgatgatttataaactaaggtgacttagataaaacatacttgttgagaacacctcccaaagcacatggaatgagaacatcac |
4272471 |
T |
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| Q |
220 |
agtcatggacaagcaaatcatttggattcatagcatctcctcctgagaaatccttcaaacttccgttgcctgccttgtgtttcagaagagcagcaatatc |
319 |
Q |
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| T |
4272472 |
agtcatggacaagcaaatcatttggattcatagcatctcctcctgagaaatccttcaaacttccgttgcctgccttgtgtttcagaagagcagcaatatc |
4272571 |
T |
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| Q |
320 |
aatcccatttggattactaatagcaccattgatgtc |
355 |
Q |
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| T |
4272572 |
aatcccatttggattactaatagcaccattgatgtc |
4272607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 168 - 256
Target Start/End: Complemental strand, 41212038 - 41211950
Alignment:
| Q |
168 |
aaaacatacttgttgagaacacctcccaaagcacatggaatgagaacatcacagtcatggacaagcaaatcatttggattcatagcatc |
256 |
Q |
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| T |
41212038 |
aaaacatacttgtttagaactccacccaaggcacaggggataagaacatcacattcatgaacaagtaattcatttggatccatggcatc |
41211950 |
T |
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