View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8603_low_11 (Length: 349)
Name: NF8603_low_11
Description: NF8603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8603_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 15 - 331
Target Start/End: Complemental strand, 44101061 - 44100745
Alignment:
| Q |
15 |
cagagaggaaaggatggtaaacgcctttgagcgcataacaagcgcagatcgaagcagagacttgtgctgcaatgtaggctggaacatgtgcccatggaaa |
114 |
Q |
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| T |
44101061 |
cagagaggaaaggatggtaaacgcctttgagcgcataacaagcacagatcgaagcagagacttgtgctgcaatgtaggctggaacatgtgcccagggaaa |
44100962 |
T |
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| Q |
115 |
atggcgaaatgccgcgaaggcaatggtgagtgatggattgagatgtgcacctgagatatgaccaattgagagaataatgaacatgaccgttaatccagca |
214 |
Q |
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| T |
44100961 |
atggcgaaatgccgcgaaggcaatggtgagtgatggattgagatgagcacctgagatatgaccaattgagagaataatgaacatgactgtcagtccagca |
44100862 |
T |
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| Q |
215 |
caagctgcatttcccataagagtttctactccattgtatttgttgttcactattggtcctgctgttgctgcatatattaatatgaacgttcctacaaact |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44100861 |
caagctgcatttcccataagagtttctactccattgtatttgttgttcactattggtcctgctgttgctgcatatattaatatgaacgttcctacaaact |
44100762 |
T |
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| Q |
315 |
ctgctccaatctgtgac |
331 |
Q |
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| T |
44100761 |
ctgctccaatctgtgac |
44100745 |
T |
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