View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8603_low_14 (Length: 301)
Name: NF8603_low_14
Description: NF8603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8603_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 16 - 293
Target Start/End: Original strand, 4332680 - 4332957
Alignment:
| Q |
16 |
caaaaactacgctgattcgcaatggtgtcttcaagagttgatgcaaattatggagtgttttagaaccacaagacaggtggtactgcctgtgttctacgat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4332680 |
caaaaactacgctgattcgcaatggtgtcttcaagagttgatgcaaattatggagtgttttagaaccacaagacaggtggtactgcctgtgttctacgat |
4332779 |
T |
|
| Q |
116 |
gtacatccctcggaagttcgtagtcaaacaggtgactttggtaaagcttttcgaaatcttttgaacagagttttaaaagtggatgaattcatggtgccaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4332780 |
gtacatccctcggaagttcgtagtcaaacaggtgactttggtaaagcttttcaaaatcttttgaacagagttttaaaagtggatgaattcatggtgccaa |
4332879 |
T |
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| Q |
216 |
agtggagagacgcgcttcgtaatgctgctggcattgcaggatttgttgttctaaattccaggttacttctctctctgc |
293 |
Q |
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| T |
4332880 |
agtggagagacgcgcttcgtaatgctgctggcattgcaggatttgttgttctaaattccaggttacttctctctctgc |
4332957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 139 - 278
Target Start/End: Original strand, 4350370 - 4350509
Alignment:
| Q |
139 |
tcaaacaggtgactttggtaaagcttttcgaaatcttttgaacagagttttaaaagtggatgaattcatggtgccaaagtggagagacgcgcttcgtaat |
238 |
Q |
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|||||||||||| |||||| ||||||||| ||| ||||||| ||||||||||| |||||||||||||| ||||||||||||||||| |||||| || |
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| T |
4350370 |
tcaaacaggtgagtttggtgaagcttttcaaaaagcattgaacaaagttttaaaaggagatgaattcatggtaccaaagtggagagacgcacttcgtgat |
4350469 |
T |
|
| Q |
239 |
gctgctggcattgcaggatttgttgttctaaattccaggt |
278 |
Q |
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| T |
4350470 |
gctgctggccttgcaggatttgttgtcctgaattccaggt |
4350509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 280
Target Start/End: Complemental strand, 4323903 - 4323640
Alignment:
| Q |
17 |
aaaaactacgctgattcgcaatggtgtcttcaagagttgatgcaaattatggagtgttttagaaccacaagacaggtggtactgcctgtgttctacgatg |
116 |
Q |
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||||||||||| ||||| | |||||||||||||||||| |||||| |||| | || ||||||||| | ||||| |||||||||||||||||||||| |
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| T |
4323903 |
aaaaactacgccgattccaagtggtgtcttcaagagttgtggcaaataatggtgcgtcacagaaccacaggccaggttgtactgcctgtgttctacgatg |
4323804 |
T |
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| Q |
117 |
tacatccctcggaagttcgtagtcaaacaggtgactttggtaaagcttttcgaaatcttttgaacagagttttaaaagtggatgaattcatggtgccaaa |
216 |
Q |
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| |||| || ||||||||| |||||| ||||| ||||||||| | |||| |||||| ||||||||| ||| | | | ||| ||| |||| | | | |
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| T |
4323803 |
tcgatccttctgaagttcgtcatcaaactggtgagtttggtaaatcatttctaaatctattgaacagaatttcacatgaggagaaatggatggcgttaga |
4323704 |
T |
|
| Q |
217 |
gtggagagacgcgcttcgtaatgctgctggcattgcaggatttgttgttctaaattccaggtta |
280 |
Q |
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||||||| | | ||||||| ||| |||||| |||| ||||||||||| ||||||||||||||| |
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| T |
4323703 |
gtggagaaatgagcttcgtgttgcggctggccttgctggatttgttgtcctaaattccaggtta |
4323640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 16 - 184
Target Start/End: Original strand, 4356783 - 4356951
Alignment:
| Q |
16 |
caaaaactacgctgattcgcaatggtgtcttcaagagttgatgcaaattatggagtgttttagaaccacaagacaggtggtactgcctgtgttctacgat |
115 |
Q |
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||||||||| ||||||||| ||||||||| | ||||||| | ||||| ||| ||||| || || | | | || ||||||||||| |||||||| ||| |
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| T |
4356783 |
caaaaactatgctgattcgtcatggtgtctgcgagagttggttcaaataatgtcgtgttacagtactataggccaagtggtactgccagtgttctatgat |
4356882 |
T |
|
| Q |
116 |
gtacatccctcggaagttcgtagtcaaacaggtgactttggtaaagcttttcgaaatcttttgaacaga |
184 |
Q |
| |
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|| | || || ||||||||| ||||||| ||||||||||||||| | |||| |||||||||||||||| |
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| T |
4356883 |
gttgacccttccgaagttcgtcgtcaaaccggtgactttggtaaatcatttcaaaatcttttgaacaga |
4356951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 4129626 - 4129500
Alignment:
| Q |
16 |
caaaaactacgctgattcgcaatggtgtcttcaagagttgatgcaaattatggagtgttttagaaccacaagacaggtggtactgcctgtgttctacgat |
115 |
Q |
| |
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|||||||||||| ||||| | |||||| | || |||||||| ||||| ||||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
4129626 |
caaaaactacgcggattcaccgtggtgtatgcaggagttgattcaaatactggagtgttacagaaccactggacaggtggtactgcctgtgttctacgat |
4129527 |
T |
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| Q |
116 |
gtacatccctcggaagttcgtagtcaa |
142 |
Q |
| |
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|| |||| || || |||||| ||||| |
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| T |
4129526 |
gtttatccgtctgatgttcgtcgtcaa |
4129500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 180
Target Start/End: Original strand, 5422244 - 5422401
Alignment:
| Q |
23 |
tacgctgattcgcaatggtgtcttcaagagttgatgcaaattatggagtgttttagaaccacaagacaggtggtactgcctgtgttctacgatgtacatc |
122 |
Q |
| |
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||||| ||||| |||||||||||| | |||||| || |||| ||||||||| ||||||| |||| | || ||||| ||||||| ||| ||| ||| |
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| T |
5422244 |
tacgcggattcacaatggtgtcttgatgagttgttgaaaataatggagtgtcacagaaccattggacaaattgttctgccggtgttcttcgacgtagatc |
5422343 |
T |
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| Q |
123 |
cctcggaagttcgtagtcaaacaggtgactttggtaaagcttttcgaaatcttttgaa |
180 |
Q |
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| || ||||| ||| ||||||| ||||| ||||| ||||| |||| |||||||||||| |
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| T |
5422344 |
catccgaagtacgtcgtcaaaccggtgaatttggaaaagcatttcaaaatcttttgaa |
5422401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 184
Target Start/End: Original strand, 5340679 - 5340756
Alignment:
| Q |
107 |
ttctacgatgtacatccctcggaagttcgtagtcaaacaggtgactttggtaaagcttttcgaaatcttttgaacaga |
184 |
Q |
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||||||||||| ||||||| ||| | ||| ||||||||| || ||||| ||||| |||| |||||||||||||||| |
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| T |
5340679 |
ttctacgatgttgatccctcagaaatacgtcatcaaacaggagagtttggaaaagcatttcaaaatcttttgaacaga |
5340756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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