View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8603_low_18 (Length: 251)
Name: NF8603_low_18
Description: NF8603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8603_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 25 - 241
Target Start/End: Complemental strand, 2308763 - 2308547
Alignment:
| Q |
25 |
aacggaaaattttattctcatcgagatgtacaaaaattgtaccactcgcaaatagaaacggaaagataaataatacaaacgtgccgcatatatacggaac |
124 |
Q |
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| T |
2308763 |
aacggcaaattttattctcgtcgagatgtacaaaaattgtaccactcgcagatagaaacggaaagataaataatacaaacgtgccgcatatatacggaac |
2308664 |
T |
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| Q |
125 |
accaaaacgtactaccccaaggaaaaaacaccacgctaaaaaactcaaaggaggtaatcatgatgctactatatgcaactaaggaaagggaaaatcaaca |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2308663 |
accaaaacgtactaccccaaggaaaaaacaccacgctaaaaaactcaaaggaggtaatcatgatgctactatatgcaactaaggaaagggaaaatcaaca |
2308564 |
T |
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| Q |
225 |
atacatgacagtctctg |
241 |
Q |
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| T |
2308563 |
atacatgacagtctctg |
2308547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 214
Target Start/End: Original strand, 49014632 - 49014797
Alignment:
| Q |
52 |
gtacaaaaattgtaccactcgcaaatagaaa---cggaaagataaataatacaaacgtgccgcatatatacggaacaccaaaacgtactaccccaaggaa |
148 |
Q |
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| T |
49014632 |
gtacaaaaactgtaccgctcgcaaaaaaaaaaaacagaaagaaatagaatacaaaagtgccgcatatagaccgaacaccataaaccaccaccccaaagaa |
49014731 |
T |
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| Q |
149 |
aa--aacaccacgctaaaaaactcaaaggaggtaatcatgatgctactatatgcaactaaggaaaggg |
214 |
Q |
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| T |
49014732 |
aagaaacaccacactaaaaacc--aaaggaggtaaacatgatgcttctatatgcaactaaggaaaggg |
49014797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 118
Target Start/End: Complemental strand, 6246181 - 6246149
Alignment:
| Q |
86 |
aaagataaataatacaaacgtgccgcatatata |
118 |
Q |
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|||||||||||||||||| |||||||||||||| |
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| T |
6246181 |
aaagataaataatacaaaagtgccgcatatata |
6246149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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