View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8603_low_2 (Length: 1274)

Name: NF8603_low_2
Description: NF8603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8603_low_2
NF8603_low_2
[»] chr4 (28 HSPs)
chr4 (17-961)||(3767041-3767986)
chr4 (44-393)||(3781046-3781398)
chr4 (1028-1207)||(3768052-3768232)
chr4 (17-290)||(3755513-3755789)
chr4 (44-393)||(3776733-3777082)
chr4 (702-940)||(34513686-34513924)
chr4 (670-961)||(45499086-45499379)
chr4 (738-958)||(37910578-37910797)
chr4 (677-958)||(28115840-28116121)
chr4 (679-958)||(34940259-34940538)
chr4 (763-949)||(5787224-5787410)
chr4 (794-949)||(44290091-44290246)
chr4 (800-958)||(34513934-34514091)
chr4 (42-383)||(3762650-3763000)
chr4 (42-312)||(3751671-3751947)
chr4 (50-312)||(3771304-3771569)
chr4 (718-948)||(17702135-17702365)
chr4 (42-289)||(3745854-3746107)
chr4 (678-765)||(21342155-21342242)
chr4 (1224-1266)||(3768259-3768301)
chr4 (862-928)||(11138750-11138816)
chr4 (677-749)||(37911176-37911248)
chr4 (20-53)||(3770807-3770840)
chr4 (690-766)||(53923655-53923731)
chr4 (730-773)||(11138663-11138706)
chr4 (856-907)||(53923864-53923915)
chr4 (1027-1061)||(5787115-5787149)
chr4 (1030-1063)||(34940610-34940643)
[»] chr1 (14 HSPs)
chr1 (677-958)||(28622827-28623108)
chr1 (670-932)||(49549473-49549734)
chr1 (671-910)||(37346974-37347213)
chr1 (677-945)||(19909968-19910236)
chr1 (678-905)||(10306758-10306987)
chr1 (704-773)||(48527377-48527446)
chr1 (718-779)||(52267631-52267692)
chr1 (1027-1063)||(37346168-37346204)
chr1 (1027-1062)||(52268254-52268289)
chr1 (1027-1063)||(19910328-19910364)
chr1 (897-933)||(49549853-49549889)
chr1 (1028-1059)||(30952148-30952179)
chr1 (852-921)||(12856822-12856892)
chr1 (691-816)||(35508891-35509016)
[»] chr5 (19 HSPs)
chr5 (677-961)||(29860834-29861117)
chr5 (678-956)||(33007914-33008189)
chr5 (714-958)||(33134090-33134333)
chr5 (678-955)||(15922102-15922379)
chr5 (672-959)||(31077809-31078092)
chr5 (678-905)||(7883742-7883969)
chr5 (716-958)||(25346967-25347219)
chr5 (671-905)||(5868239-5868472)
chr5 (671-811)||(42683974-42684114)
chr5 (715-882)||(21092372-21092537)
chr5 (690-816)||(2498915-2499041)
chr5 (894-958)||(21091178-21091242)
chr5 (1027-1063)||(25346862-25346898)
chr5 (1027-1063)||(33134402-33134438)
chr5 (1027-1062)||(21091074-21091109)
chr5 (1027-1063)||(31078184-31078220)
chr5 (1027-1063)||(39351585-39351621)
chr5 (894-958)||(42683848-42683912)
chr5 (1027-1064)||(33007806-33007843)
[»] chr2 (14 HSPs)
chr2 (671-956)||(40619612-40619897)
chr2 (709-958)||(41595239-41595488)
chr2 (670-954)||(13996071-13996355)
chr2 (690-958)||(27338700-27338958)
chr2 (671-944)||(13349429-13349702)
chr2 (794-959)||(19695769-19695932)
chr2 (671-858)||(37485562-37485746)
chr2 (671-785)||(19695466-19695580)
chr2 (895-958)||(37485757-37485820)
chr2 (1028-1063)||(13995549-13995584)
chr2 (793-888)||(34355880-34355975)
chr2 (1027-1063)||(27339027-27339063)
chr2 (853-928)||(15665342-15665417)
chr2 (1027-1065)||(40619503-40619541)
[»] chr8 (18 HSPs)
chr8 (678-958)||(43596799-43597079)
chr8 (677-960)||(37246131-37246412)
chr8 (678-961)||(16295305-16295586)
chr8 (678-961)||(16303007-16303288)
chr8 (671-876)||(32962016-32962221)
chr8 (677-958)||(15268592-15268873)
chr8 (727-955)||(27696248-27696473)
chr8 (745-958)||(40953263-40953476)
chr8 (765-949)||(11656270-11656454)
chr8 (671-905)||(16456456-16456690)
chr8 (709-773)||(11657003-11657067)
chr8 (714-843)||(8491048-8491176)
chr8 (670-733)||(42180461-42180524)
chr8 (710-755)||(511650-511695)
chr8 (1027-1063)||(3174233-3174269)
chr8 (1027-1063)||(40953545-40953581)
chr8 (1028-1059)||(23586059-23586090)
chr8 (841-888)||(35010687-35010734)
[»] chr3 (15 HSPs)
chr3 (669-958)||(28457698-28457982)
chr3 (670-958)||(40700941-40701228)
chr3 (696-905)||(21748362-21748571)
chr3 (671-877)||(33072584-33072790)
chr3 (677-825)||(7818464-7818611)
chr3 (677-903)||(45853075-45853299)
chr3 (678-804)||(21495053-21495178)
chr3 (871-949)||(4384957-4385035)
chr3 (859-905)||(21495222-21495268)
chr3 (670-766)||(46663163-46663259)
chr3 (721-761)||(27488469-27488509)
chr3 (1027-1063)||(40700836-40700872)
chr3 (676-779)||(41865803-41865906)
chr3 (1027-1060)||(28457596-28457629)
chr3 (1027-1063)||(54819668-54819705)
[»] chr6 (12 HSPs)
chr6 (674-961)||(23404450-23404736)
chr6 (709-955)||(9314806-9315051)
chr6 (670-939)||(12255070-12255339)
chr6 (678-958)||(10789337-10789618)
chr6 (671-958)||(29979314-29979597)
chr6 (677-961)||(32329317-32329590)
chr6 (728-928)||(24660738-24660938)
chr6 (852-905)||(391236-391289)
chr6 (679-776)||(12267316-12267413)
chr6 (1027-1063)||(9315123-9315159)
chr6 (912-958)||(391200-391246)
chr6 (1027-1063)||(12255428-12255464)
[»] chr7 (17 HSPs)
chr7 (677-958)||(18502991-18503274)
chr7 (678-959)||(15672876-15673149)
chr7 (709-961)||(34703033-34703288)
chr7 (730-831)||(6110160-6110261)
chr7 (869-958)||(34866358-34866447)
chr7 (50-237)||(25985271-25985461)
chr7 (692-890)||(3480709-3480908)
chr7 (675-796)||(32585825-32585946)
chr7 (677-779)||(25102600-25102707)
chr7 (702-928)||(28428933-28429160)
chr7 (671-773)||(24429348-24429450)
chr7 (861-905)||(6110261-6110305)
chr7 (856-922)||(17508667-17508733)
chr7 (856-922)||(17544481-17544547)
chr7 (697-786)||(15524263-15524351)
chr7 (852-909)||(31804759-31804816)
chr7 (1027-1063)||(34866253-34866289)
[»] scaffold0702 (1 HSPs)
scaffold0702 (718-910)||(3936-4127)
[»] scaffold0662 (1 HSPs)
scaffold0662 (718-910)||(3975-4166)
[»] scaffold0817 (1 HSPs)
scaffold0817 (677-738)||(1-62)
[»] scaffold0957 (2 HSPs)
scaffold0957 (714-790)||(1659-1735)
scaffold0957 (869-924)||(1816-1871)


Alignment Details
Target: chr4 (Bit Score: 897; Significance: 0; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 897; E-Value: 0
Query Start/End: Original strand, 17 - 961
Target Start/End: Original strand, 3767041 - 3767986
Alignment:
Q  17 ataagcaaatcaacttcatctttgcatgcagatgcatagaatccttgagcttttccaacaatcttagaattcaactgtggtcctaaagttaaagggttgt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3767041 ataagcaaatcaacttcatctttgcatgcagatgcatagaatccttgagcttttccaacaatcttagaattcaactgtggtcctaaagttaaagggttgt 3767140  T
Q  117 cgatcatgcggactgaaccaaaggcagtgttagagtttaatgatggtggaataactacgatagaagtagggttttttccactcactatgtcatgccaata 216  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3767141 cgatcatgcggactgaaccaaaggcagtgttggagtttaatgatggtggaataactacgatagaagtagggttttttccactcactatgtcatgccaata 3767240  T
Q  217 aaatttgaaatgacttagcttttccttcttgtttaggcctaacaacttgcgatctattggacgaacaaaatcaactgtgtcttgtttttctgatgaagtt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3767241 aaatttgaaatgacttagcttttccttcttgtttaggcctaacaacttgcgatctattggacgaacaaaatcaactgtgtcttgtttttctgatgaagtt 3767340  T
Q  317 gaagcagagagtgtgttgcaagatatgagaaggaagaagaacaaagtgatgaggaaatgtttggaaggcattatggtggatgcaagagattgttgtgatg 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3767341 gaagcagagagtgtgttgcaagatatgagaaggaagaagaacaaagtgatgaggaaatgtttggaaggcattatggtggatgcaagagattgttgtgatg 3767440  T
Q  417 ctaactgtggagacagtaaagtagtggaggactaggagagaagacaataatagtggaagcttaatgaagtgaagttaaagaaagtgaggaacaaaattat 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3767441 ctaactgtggagacagtaaagtagtggaggactaggagagaagacaataatagtggaagcttaatgaagtgaagttaaagaaagtgaggaacaaaattat 3767540  T
Q  517 aagaagaggaaagtgaaggaaaaatgacaaatggagtgggatgtagggtacgtatttttctaactatttcannnnnnnaacaagtaaaaatgagattata 616  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  3767541 aagaagaggaaagtgaaggaaaaatgacaaatggagtgggatgtagggtacgtatttttctaactatttcatttttttaacaagtaaaaatgagattata 3767640  T
Q  617 tataaacaccaacgaagaggccttaaaagcacccggtgtacc-acaaagacctcaagggttcgtttgatggtccggatagggagatatgatacgatacat 715  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||    
T  3767641 tataaacaccaacgaagaggccttaaaagcacccggtgtaccaacaaagacctcaagggtccgtttgatggtcaggatagggagatatgatatgatacat 3767740  T
Q  716 taatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatcttattttgactttcctttgtcatttatat 815  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3767741 taatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatcttattttgactttcctttgtcatttatat 3767840  T
Q  816 cataagtataagctgagttataaattatccagatgagattagaatatcattccttatttattatcttgatattctgttatttttaaaatattgtcgtttt 915  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3767841 cataagtataagctgagttataaattatccagatgagattagaatatcattccttatttattatcttgatattctgttatttttaaaatattgtcgtttt 3767940  T
Q  916 taaaataatgatagcatgcattttctattataatcaataacatacc 961  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  3767941 taaaataatgatagcatgtattttctattataatcaataacatacc 3767986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 167; E-Value: 8e-89
Query Start/End: Original strand, 44 - 393
Target Start/End: Original strand, 3781046 - 3781398
Alignment:
Q  44 gcagatgcatagaatccttgagcttttccaacaatcttagaattcaactgtggtcctaaagttaaagggttgtcgatcatgcggactgaaccaaaggcag 143  Q
    |||||||||||||||||||||||| ||||||||| ||||||| |||  | |||||||||||||||||||||||| ||||||   ||  ||||||| || |    
T  3781046 gcagatgcatagaatccttgagctcttccaacaagcttagaactcagttctggtcctaaagttaaagggttgtcaatcatgttaaccaaaccaaaagcgg 3781145  T
Q  144 tgttagagttta------atgatggtggaataactacgatagaagtagggttttttccactcactatgtcatgccaataaaatttgaaatgacttagctt 237  Q
    || | |||||||      ||||||||||||||| | | |  ||||| || |||||||||||||  | |||||||||||| ||| ||||||||||||||||    
T  3781146 tggttgagtttacttttgatgatggtggaataattgcaaccgaagttggattttttccactcaagacgtcatgccaatagaatctgaaatgacttagctt 3781245  T
Q  238 ttccttcttgtttaggcctaacaacttgcgatctattggacgaacaaaatcaactgtgtcttgtttttctgatgaagttgaagcagagagtgtgttgcaa 337  Q
    ||| |||||||||||||||||||| ||||||||||| |||||||||||||| |  |||||||||||||||||||||||||||| || |||||||||||||    
T  3781246 ttctttcttgtttaggcctaacaatttgcgatctatcggacgaacaaaatcgaaagtgtcttgtttttctgatgaagttgaagtagtgagtgtgttgcaa 3781345  T
Q  338 gatatgagaaggaagaagaacaaagtgatgaggaaatgtttggaaggcattatggt 393  Q
    |||||||||||||||||||||||||   |||||||||||| |||||||||| ||||    
T  3781346 gatatgagaaggaagaagaacaaag---tgaggaaatgttgggaaggcattgtggt 3781398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 165; E-Value: 1e-87
Query Start/End: Original strand, 1028 - 1207
Target Start/End: Original strand, 3768052 - 3768232
Alignment:
Q  1028 ttatcatgtgcgcatcaaacacatgataggattaatatcatgcccctat-cctatcatgaccatcaaacggatcctaatcttaaaaagaagtgacttttg 1126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3768052 ttatcatgtgcgcatcaaacacatgataggattaatatcatgccccttttcctatcatgaccatcaaacggatcctaatcttaaaaagaagtgacttttg 3768151  T
Q  1127 gacatcaaaattttgatcttacctgtgtattttggtttttatgttaatttttttaactagtgtgtagaagataaaatgttt 1207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3768152 gacatcaaaattttgatcttacctgtgtattttggtttttatgttaatttttataactagtgtgtagaagataaaatgttt 3768232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 159; E-Value: 5e-84
Query Start/End: Original strand, 17 - 290
Target Start/End: Original strand, 3755513 - 3755789
Alignment:
Q  17 ataagcaaatcaacttcatctttgcatgcagatgcatagaatccttgagcttttccaacaatcttagaattcaactgtggtcctaaagttaaagggttgt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3755513 ataagcaaatcaacttcatctttgcatgcagatgcatagaatccttgagcttttccaacaatcttagaattcaactgtggtcctaaagttaaagggttgt 3755612  T
Q  117 cgatcatgcggactgaaccaaaggcagtgttagagttt------aatgatggtggaataactacgatagaagtagggttttttccactcactatgtcatg 210  Q
    ||||||||||||||||||||||||||||| | ||||||      | || |||||| | |||| | |  ||||||||||||||||||||||||||||| ||    
T  3755613 cgatcatgcggactgaaccaaaggcagtggttgagtttagtttcattggtggtgggacaactgcaactgaagtagggttttttccactcactatgtcgtg 3755712  T
Q  211 ccaataaaatttgaaatgacttagcttttccttcttgtttaggcctaacaacttgcgatctattggacgaacaaaatcaa 290  Q
    ||| || ||| ||||||||||||| |||||||||   ||||||| ||| || ||||| ||||| ||||||||||| ||||    
T  3755713 ccagtagaatctgaaatgacttagtttttccttc---tttaggcttaataatttgcggtctataggacgaacaaattcaa 3755789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 149; E-Value: 4e-78
Query Start/End: Original strand, 44 - 393
Target Start/End: Original strand, 3776733 - 3777082
Alignment:
Q  44 gcagatgcatagaatccttgagcttttccaacaatcttagaattcaactgtggtcctaaagttaaagggttgtcgatcatgcggactgaaccaaaggcag 143  Q
    |||||||||||||||||||||||| | |||||||  |||||| |||| |  ||||||||||||||||||||||| |||||||  ||| |||||||   ||    
T  3776733 gcagatgcatagaatccttgagctctaccaacaagtttagaactcaattcgggtcctaaagttaaagggttgtcaatcatgctaactaaaccaaaaaaag 3776832  T
Q  144 tgttagagttta------atgatggtggaataactacgatagaagtagggttttttccactcactatgtcatgccaataaaatttgaaatgacttagctt 237  Q
    || | |||||||      |||||||||||| || | | |  ||||| || ||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  3776833 tggttgagtttacttttgatgatggtggaacaattgcaaccgaagttggattttttccactaactatgtcatgccaatataatttgaaatgacttagctt 3776932  T
Q  238 ttccttcttgtttaggcctaacaacttgcgatctattggacgaacaaaatcaactgtgtcttgtttttctgatgaagttgaagcagagagtgtgttgcaa 337  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||| ||||||| ||   ||||||| || ||||||||| |||    
T  3776933 ttccttcttgtttaggcctaacaacttgcgatctattggacgaacaaaatcaaaggtatcttctttttctaat---gttgaagaagtgagtgtgttacaa 3777029  T
Q  338 gatatgagaaggaagaagaacaaagtgatgaggaaatgtttggaaggcattatggt 393  Q
    || || |||||||||||||||||||   |||||||||||||||||| |||| ||||    
T  3777030 gagataagaaggaagaagaacaaag---tgaggaaatgtttggaagacattgtggt 3777082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 139; E-Value: 4e-72
Query Start/End: Original strand, 702 - 940
Target Start/End: Complemental strand, 34513924 - 34513686
Alignment:
Q  702 atgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatcttattttgactttcc 801  Q
    |||||| ||||||||||| ||||||||||||||| |||||||||||||||||||  |||||||||||||||| ||||| |||||| |||  |||||||||    
T  34513924 atgatatgatacattaattatatcctgcttaaatctcatgtttgatgcaccaaatggataggataaaataaaccatttttctatcatatcctgactttcc 34513825  T
Q  802 tttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttattatcttgatattctgttatttttaa 901  Q
    ||||| |||| |||| | ||||||||||| |||| ||||||||| |||| |||||||| |||||| ||||||||||||||||||||||||  ||||||||    
T  34513824 tttgtaatttctatcctgagtataagctgggttagaaattatcctgatgggattagaaaatcatttcttatttattatcttgatattctgccatttttaa 34513725  T
Q  902 aatattgtcgtttttaaaataatgatagcatgcattttc 940  Q
    ||||||||| ||||||||||||||||| |||| ||||||    
T  34513724 aatattgtcatttttaaaataatgataacatgtattttc 34513686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 135; E-Value: 1e-69
Query Start/End: Original strand, 670 - 961
Target Start/End: Complemental strand, 45499379 - 45499086
Alignment:
Q  670 aagggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaa 769  Q
    |||||| ||| ||||| || ||||||||||  | |||| |||| ||||||||||| || |||||||  |||||||||||||||||| |||||||||||||    
T  45499379 aagggtccgtgtgatgatcaggatagggaggcaagatatgatatattaatcatattcttcttaaatcacatgtttgatgcaccaaaatgataggataaaa 45499280  T
Q  770 taaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattcct 869  Q
    |||| |||||||||||| |||  |||||||||||||| ||||||||| | | |||| |||| |||| ||| ||||  |||| |||||||| ||||||| |    
T  45499279 taaaccatttctctatcctatcctgactttcctttgtaatttatatcctgaatataggctgggttagaaactatcatgatgggattagaagatcattctt 45499180  T
Q  870 tatttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagc--atgcattttctattataatcaataacatacc 961  Q
    ||||||||||||||||||||||  ||||| ||||||||||| |||||||||||||||||||  ||| ||||||||||||||| |||||||||||    
T  45499179 tatttattatcttgatattctgccattttgaaaatattgtcatttttaaaataatgatagcatatgtattttctattataattaataacatacc 45499086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 129; E-Value: 4e-66
Query Start/End: Original strand, 738 - 958
Target Start/End: Complemental strand, 37910797 - 37910578
Alignment:
Q  738 catgtttgatgcaccaaagtgataggataaaataaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttata 837  Q
    ||||||||||||||||||| |||| |||||||||||||||||  ||||| |||  |||||||| ||||| ||||||||||| ||||||||||| |||| |    
T  37910797 catgtttgatgcaccaaagggatacgataaaataaatcattttcctatcatatcctgactttcgtttgtaatttatatcatgagtataagctgggttaga 37910698  T
Q  838 aattatccagatgagattagaatatcattccttatttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcatt 937  Q
    |||||||| |||| |||||||| ||||||||||||||||||| |||||||||||  | ||||||||||||||| |||||||||||||||||||||| |||    
T  37910697 aattatcctgatgggattagaagatcattccttatttattattttgatattctgcca-ttttaaaatattgtcatttttaaaataatgatagcatgtatt 37910599  T
Q  938 ttctattataatcaataacat 958  Q
    |||||||||||| ||||||||    
T  37910598 ttctattataattaataacat 37910578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 677 - 958
Target Start/End: Complemental strand, 28116121 - 28115840
Alignment:
Q  677 cgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatca 776  Q
    ||||| |||||  ||||||||||  |||||| ||||||||||||||||  ||||||||| |||| ||||||||||| |||||||| ||||||||||| ||    
T  28116121 cgtttaatggtgaggatagggagccatgatatgatacattaatcatattatgcttaaatctcatatttgatgcacctaagtgataagataaaataaacca 28116022  T
Q  777 tttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttat 876  Q
    |||  ||||| |||  | |||||||||||| |||| |||| | |||||||| || |||| ||||||||| ||||  ||||||| ||||||| ||||||||    
T  28116021 ttttcctatcctatcctaactttcctttgtaatttctatcctgagtataagttgtgttagaaattatcctgatggaattagaagatcattctttatttat 28115922  T
Q  877 tatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacat 958  Q
    |||||||| ||| ||  ||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||| ||||||||    
T  28115921 tatcttgagattttgccatttttaaaatattgtcattttttaaattatgatagcatgcattttctattataattaataacat 28115840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 112; E-Value: 5e-56
Query Start/End: Original strand, 679 - 958
Target Start/End: Original strand, 34940259 - 34940538
Alignment:
Q  679 tttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatt 778  Q
    |||||||||| ||||||||||| |  |||  ||||||||||||| | ||  |||||| |||||||||||||||||||  |||||||||||||||| ||||    
T  34940259 tttgatggtcaggatagggagacagaatataatacattaatcatgttctctttaaatctcatgtttgatgcaccaaaaggataggataaaataaaccatt 34940358  T
Q  779 tctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttatta 878  Q
    |   |||| |||  |||||||||||||| |||| |||| | |||||| ||||| ||||||||||||| |||| |||||||| |||| | |||||||||||    
T  34940359 ttcatatcctatcctgactttcctttgtaatttctatcctgagtatatgctgatttataaattatcctgatgggattagaaaatcaattcttatttatta 34940458  T
Q  879 tcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacat 958  Q
    ||||||||||||    |||| |||||||| || ||||||||||||||||| |||| ||||||| ||||||| ||||||||    
T  34940459 tcttgatattcttcctttttaaaaatattatcatttttaaaataatgataacatgtattttctgttataattaataacat 34940538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 763 - 949
Target Start/End: Complemental strand, 5787410 - 5787224
Alignment:
Q  763 gataaaataaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatat 862  Q
    |||||||||||||||||  ||||| |||  ||| |||||||||| |||| |||    |||||| ||||||||| ||||||||| |||| ||||| || ||    
T  5787410 gataaaataaatcattttcctatcctatcatgattttcctttgtaatttctatgtcgagtatatgctgagttagaaattatcctgatgggattaaaagat 5787311  T
Q  863 cattccttatttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataat 949  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  5787310 cattccttatttattatcttgatattctgccatttttaaaatattgtcatttttaaaataatgatagcatgtattttctattataat 5787224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 92; E-Value: 5e-44
Query Start/End: Original strand, 794 - 949
Target Start/End: Complemental strand, 44290246 - 44290091
Alignment:
Q  794 gactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttattatcttgatattctgtt 893  Q
    ||||||||||||| ||||||||| | |||||| ||||||||| || ||||||  |||||||||||| ||||||  |||||||||||||||||||||||      
T  44290246 gactttcctttgtaatttatatcctgagtataggctgagttagaagttatcctaatgagattagaagatcattaattatttattatcttgatattctgcc 44290147  T
Q  894 atttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataat 949  Q
    |||||||||||||| || |||||||||||||||||||||| |||||||||||||||    
T  44290146 atttttaaaatattatcatttttaaaataatgatagcatgtattttctattataat 44290091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 800 - 958
Target Start/End: Original strand, 34513934 - 34514091
Alignment:
Q  800 cctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttattatcttgatattctgttattttt 899  Q
    ||||||| |||| |||| | |||||||| ||||||| ||||||||| || |||||||||| |||||| ||||||||||||||||||||||||  ||||||    
T  34513934 cctttgtaatttctatcttgagtataagatgagttagaaattatccggacgagattagaagatcatttcttatttattatcttgatattctgccattttt 34514033  T
Q  900 aaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacat 958  Q
    |||||||||||  ||||||||||||||||||||| |||||| |||||||| ||||||||    
T  34514034 aaaatattgtc-attttaaaataatgatagcatgtattttccattataattaataacat 34514091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 84; E-Value: 3e-39
Query Start/End: Original strand, 42 - 383
Target Start/End: Original strand, 3762650 - 3763000
Alignment:
Q  42 atgcagatgcatagaatccttgagcttttccaacaatcttagaattcaactgtggtcctaaagttaaagggttgtcgatcatgcggactgaaccaaaggc 141  Q
    |||||||||||||||||||||||||| |||||||||  |||||| |||  |  ||||||||||| ||||||||||| |||||||||||| ||||||| ||    
T  3762650 atgcagatgcatagaatccttgagctcttccaacaagtttagaactcagttcgggtcctaaagtcaaagggttgtcaatcatgcggactaaaccaaaagc 3762749  T
Q  142 agt-------gtt-ag---agttt-aatgatggtggaataactacgatagaagtagggttttttccactcactatgtcatgccaataaaatttgaaatga 229  Q
    | |       ||| ||   ||||| |||| |||| ||| || |   || |  |||||||| |||||||| | |||||||||||| || ||| | |||||     
T  3762750 attaaggccggttgagtgtagtttcaatggtggttgaacaattgtaattgttgtagggttatttccacttagtatgtcatgccagtagaatctaaaatgg 3762849  T
Q  230 cttagcttttccttcttgtttaggcctaacaacttgcgatctattggacgaacaaaatcaactgtgtcttgtttttctgatgaagttgaagcagagagtg 329  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||  || ||||  ||||||||||| |  |  |  | ||| |    
T  3762850 cttagtttttccttcttgtttaggcctaacaacttgcggtctattggacgaacaaaatcaaaagtttcttcattttctgatgatgaagttgatgtgaggg 3762949  T
Q  330 tgttgcaagatatgagaaggaagaagaacaaagtgatgaggaaatgtttggaag 383  Q
    |||||||||| |  |||||||||||||||||||   ||||||||||||||||||    
T  3762950 tgttgcaagaaagtagaaggaagaagaacaaag---tgaggaaatgtttggaag 3763000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 42 - 312
Target Start/End: Original strand, 3751671 - 3751947
Alignment:
Q  42 atgcagatgcatagaatccttgagcttttccaacaatcttagaattcaactgtggtcctaaagttaaagggttgtcgatcatgcggactgaaccaaaggc 141  Q
    |||||||||||||||| ||||||||||||||||||| ||||||| |||| |||||||||| ||| |||||||  || | ||||  ||||||||||||       
T  3751671 atgcagatgcatagaaaccttgagcttttccaacaagcttagaactcaattgtggtcctatagtcaaagggtcatcaaacatgttgactgaaccaaaata 3751770  T
Q  142 agtgttagagttta------atgatggtggaataactacgatagaagtagggttttttccactcactatgtcatgccaataaaatttgaaatgacttagc 235  Q
    |||| | | |||||      ||| |||||||| || |   || | ||| || ||||| |||||||  || ||||||||||| ||| |||||||||||||     
T  3751771 agtggttgtgtttagcttcaatggtggtggaacaattgtaattgcagtgggatttttcccactcaagatatcatgccaatagaatctgaaatgacttagt 3751870  T
Q  236 ttttccttcttgtttaggcctaacaacttgcgatctattggacgaacaaaatcaactgtgtcttgtttttctgatga 312  Q
    ||||| ||||||||||||| |||||| ||||| ||||||||||||||||||||||  || |||||||||||| ||||    
T  3751871 ttttctttcttgtttaggcttaacaatttgcggtctattggacgaacaaaatcaaaagtttcttgtttttctaatga 3751947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 76; E-Value: 2e-34
Query Start/End: Original strand, 50 - 312
Target Start/End: Original strand, 3771304 - 3771569
Alignment:
Q  50 gcatagaatccttgagcttttccaacaatcttagaattcaactgtggtcctaaagttaaagggttgtcgatcatgcggactgaaccaaaggcagtgttag 149  Q
    |||| ||| ||||||| ||||||||||| ||||||| |||  | ||||||||||||||||||||||||||||||||||||||||||||| |||||| | |    
T  3771304 gcatcgaacccttgagattttccaacaagcttagaactcagttctggtcctaaagttaaagggttgtcgatcatgcggactgaaccaaaagcagtggttg 3771403  T
Q  150 agttt------aatgatggtggaataactacgatagaagtagggttttttccactcactatgtcatgccaataaaatttgaaatgacttagcttttcctt 243  Q
     ||||      | || |||||||| || ||  |  |||| |||||||||||||||| |||| || ||||| || ||| ||||||||||||| ||||||||    
T  3771404 tgtttagtttcattggtggtggaacaattattaccgaaggagggttttttccactcgctatctcgtgccagtagaatctgaaatgacttagtttttcctt 3771503  T
Q  244 cttgtttaggcctaacaacttgcgatctattggacgaacaaaatcaactgtgtcttgtttttctgatga 312  Q
    |   ||||||| ||| || ||||| ||||| ||||||||||| ||||  ||||| |  |||||||||||    
T  3771504 c---tttaggcttaataatttgcggtctataggacgaacaaattcaaaagtgtcatcattttctgatga 3771569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 76; E-Value: 2e-34
Query Start/End: Original strand, 718 - 948
Target Start/End: Original strand, 17702135 - 17702365
Alignment:
Q  718 atcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaa-tcatttctctatcttattttgactttcctttgtcatttatatc 816  Q
    |||||||| | ||||||| |||||||||||||||||||| |||| ||||||||||| |  ||||| |||| ||| ||| ||||||||||| |||| ||||    
T  17702135 atcatatctttcttaaatctcatgtttgatgcaccaaagagataagataaaataaactgttttct-tatcctatcttgtctttcctttgtaatttttatc 17702233  T
Q  817 ataagtataagctgagttataaattatccagatgagattagaatatcattccttatttattatcttgatattctgttatttttaaaatattgtcgttttt 916  Q
     | |||||||  ||||||| ||| ||||| |||   ||||||| || ||| ||||||||||||| |||||||||   ||||||||||| ||||| |||||    
T  17702234 ctgagtataaattgagttagaaactatcctgatagaattagaagataatttcttatttattatcatgatattcttccatttttaaaatgttgtcattttt 17702333  T
Q  917 aaaataatgatagcatgcattttctattataa 948  Q
    |||||||||||| |||| ||||  ||||||||    
T  17702334 aaaataatgatatcatgtatttgttattataa 17702365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 71; E-Value: 2e-31
Query Start/End: Original strand, 42 - 289
Target Start/End: Original strand, 3745854 - 3746107
Alignment:
Q  42 atgcagatgcatagaatccttgagcttttccaacaatcttagaattcaactgtggtcctaaagttaaagggttgtcgatcatgcggactgaaccaaaggc 141  Q
    ||||||||||||| || ||||||||||||||||||| ||||||| |||  | |||||||||||||||||||||||| || |||  |||| ||||||| |     
T  3745854 atgcagatgcatacaacccttgagcttttccaacaagcttagaactcatttttggtcctaaagttaaagggttgtcaataatgttgactaaaccaaaaga 3745953  T
Q  142 agtgttagagttta------atgatggtggaataactacgatagaagtagggttttttccactcactatgtcatgccaataaaatttgaaatgacttagc 235  Q
    |||  | | |||||      ||| | |||| | ||||   || ||||||||||||||||||||||  |||||||||||| | ||| ||||||||||||||    
T  3745954 agtagttgtgtttagcttcaatggtagtggtacaactgtaattgaagtagggttttttccactcatgatgtcatgccaaaagaatctgaaatgacttagc 3746053  T
Q  236 ttttccttcttgtttaggcctaacaacttgcgatctattggacgaacaaaatca 289  Q
    ||||| |  |||||||||  |||||| ||| | ||||||| |||||||||||||    
T  3746054 ttttcttggttgtttaggtgtaacaatttggggtctattgaacgaacaaaatca 3746107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 678 - 765
Target Start/End: Complemental strand, 21342242 - 21342155
Alignment:
Q  678 gtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggat 765  Q
    ||||||||| |  ||||| |||| | |||| ||||||||||||||||||||||||||| ||||||||||||||| |||  ||||||||    
T  21342242 gtttgatggccaagatagagagacaggatatgatacattaatcatatcctgcttaaatctcatgtttgatgcacaaaatggataggat 21342155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1224 - 1266
Target Start/End: Original strand, 3768259 - 3768301
Alignment:
Q  1224 gcacatacaatgtcgtataatctctgtattttgatgtccatct 1266  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  3768259 gcacatacaatgtcgtataatctctgtattttgatgttcatct 3768301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 862 - 928
Target Start/End: Original strand, 11138750 - 11138816
Alignment:
Q  862 tcattccttatttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgata 928  Q
    ||||| ||| ||||||||| ||||||||| | ||||||||||| ||||| |||||||||||||||||    
T  11138750 tcatttcttgtttattatcatgatattctttcatttttaaaatgttgtcatttttaaaataatgata 11138816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 677 - 749
Target Start/End: Complemental strand, 37911248 - 37911176
Alignment:
Q  677 cgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgc 749  Q
    |||||||||||| |||||||||||   |||| |||||||||| |||||||| || |||| |||||||||||||    
T  37911248 cgtttgatggtcaggatagggagacgggatatgatacattaaccatatcctactgaaatctcatgtttgatgc 37911176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 3770807 - 3770840
Alignment:
Q  20 agcaaatcaacttcatctttgcatgcagatgcat 53  Q
    ||||||||||||||||||||||||||||||||||    
T  3770807 agcaaatcaacttcatctttgcatgcagatgcat 3770840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 690 - 766
Target Start/End: Original strand, 53923655 - 53923731
Alignment:
Q  690 ggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggata 766  Q
    ||||| |||||||  ||| |||| ||||||||||| |  ||||| | |||||||||||||||||||| |||||||||    
T  53923655 ggataaggagataaaatatgatatattaatcatattcgacttaattatcatgtttgatgcaccaaagagataggata 53923731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 730 - 773
Target Start/End: Original strand, 11138663 - 11138706
Alignment:
Q  730 ttaaatttcatgtttgatgcaccaaagtgataggataaaataaa 773  Q
    |||||| ||||||||||| || ||||||||||||||||||||||    
T  11138663 ttaaatatcatgtttgatacatcaaagtgataggataaaataaa 11138706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 856 - 907
Target Start/End: Original strand, 53923864 - 53923915
Alignment:
Q  856 agaatatcattccttatttattatcttgatattctgttatttttaaaatatt 907  Q
    |||| ||||||||||| |||||||| ||||||||||| ||||||| ||||||    
T  53923864 agaagatcattccttaattattatcatgatattctgtcatttttataatatt 53923915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1027 - 1061
Target Start/End: Complemental strand, 5787149 - 5787115
Alignment:
Q  1027 gttatcatgtgcgcatcaaacacatgataggatta 1061  Q
    |||||||||||||||||||||||||||||| ||||    
T  5787149 gttatcatgtgcgcatcaaacacatgatagtatta 5787115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1030 - 1063
Target Start/End: Original strand, 34940610 - 34940643
Alignment:
Q  1030 atcatgtgcgcatcaaacacatgataggattaat 1063  Q
    |||||||||||||||||||||||||| |||||||    
T  34940610 atcatgtgcgcatcaaacacatgatatgattaat 34940643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 170; Significance: 1e-90; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 170; E-Value: 1e-90
Query Start/End: Original strand, 677 - 958
Target Start/End: Complemental strand, 28623108 - 28622827
Alignment:
Q  677 cgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatca 776  Q
    |||||||||||| ||||||||||| |||||| |||||||||||||||||||  ||||||| ||||||||||||||||||| ||||| ||||||||||  |    
T  28623108 cgtttgatggtcaggatagggagacatgatatgatacattaatcatatcctatttaaattccatgtttgatgcaccaaagggatagaataaaataaacta 28623009  T
Q  777 tttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttat 876  Q
    ||| |||||| |||  |||||||||||||| |||| |||| | ||||||||||| |||| ||||||||| ||||||||||||| ||||||||||||||||    
T  28623008 tttttctatcctatcctgactttcctttgtaatttttatcctgagtataagctgtgttagaaattatcctgatgagattagaagatcattccttatttat 28622909  T
Q  877 tatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacat 958  Q
    |||||||||||||||  ||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||| ||||||||    
T  28622908 tatcttgatattctgcgatttttaaaatattgtcattttttaaataatgatagcatgtattttctattataattaataacat 28622827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 135; E-Value: 1e-69
Query Start/End: Original strand, 670 - 932
Target Start/End: Original strand, 49549473 - 49549734
Alignment:
Q  670 aagggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaa 769  Q
    |||||| |||||||||||| |||||| |||  | |||| ||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||    
T  49549473 aagggtccgtttgatggtcaggatagtgaggcaagatatgatacattaatcatatcctgcttaaatctcatatttgatgcaccaaagggataggataaaa 49549572  T
Q  770 taaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattcct 869  Q
    ||||||||||| ||||| |||  |||||||||||||| |||||||| || ||||||   || |||| || ||||||  ||| |||| ||| |||||||||    
T  49549573 taaatcatttccctatcatatcctgactttcctttgtaatttatat-atgagtatagattgggttaaaagttatcctaatgggatttgaagatcattcct 49549671  T
Q  870 tatttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcat 932  Q
    ||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||    
T  49549672 tatttattatcttgatattctgccatttttaaaatattgtcatttttaaaataatgatagcat 49549734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 671 - 910
Target Start/End: Complemental strand, 37347213 - 37346974
Alignment:
Q  671 agggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaat 770  Q
    ||||| |||||||||||| ||||||||||| |  ||| ||||||||||||||||| ||||||||| | |||||||||||||||||| |||| ||||||||    
T  37347213 agggtgcgtttgatggtcaggatagggagacagaatatgatacattaatcatatcttgcttaaatcttatgtttgatgcaccaaagggatatgataaaat 37347114  T
Q  771 aaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattcctt 870  Q
    ||| ||||| |||||| |||  ||| |||||||||| |||| |||| | |||||| | || |||| ||||||||  |||| |||||||| ||||||||||    
T  37347113 aaaccatttttctatcctatcctgattttcctttgtaatttctatcctgagtatacgatgggttagaaattatcatgatgggattagaagatcattcctt 37347014  T
Q  871 atttattatcttgatattctgttatttttaaaatattgtc 910  Q
    |||||||||| ||||||||||  ||||| |||||||||||    
T  37347013 atttattatcctgatattctgccattttaaaaatattgtc 37346974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 4e-35
Query Start/End: Original strand, 677 - 945
Target Start/End: Original strand, 19909968 - 19910236
Alignment:
Q  677 cgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatca 776  Q
    |||||||||||  |||||| |||| |  ||| ||||||||||| ||||  ||||||||| |||||||||||||| ||||| |||| ||||||||||| ||    
T  19909968 cgtttgatggttaggatagagagaca--atatgatacattaattatattgtgcttaaatatcatgtttgatgcatcaaagagataagataaaataaacca 19910065  T
Q  777 tttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatcc--agatgagattagaatatcattccttattt 874  Q
    ||| |||||| |||  |||||||||||| | |||  |||| | |||||    || |||| |||||||||  | | |||||||||| ||||| |||||||     
T  19910066 tttttctatcgtatactgactttcctttataattgttatcctgagtatttaatgggttagaaattatcctaataagagattagaagatcatgccttatta 19910165  T
Q  875 attatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctatta 945  Q
    |||||||||||||| ||  ||||||||||||||    ||||||||||||| |||||||| |||||||||||    
T  19910166 attatcttgatattttgcaatttttaaaatatttatatttttaaaataataatagcatgtattttctatta 19910236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 678 - 905
Target Start/End: Complemental strand, 10306987 - 10306758
Alignment:
Q  678 gtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcat 777  Q
    ||||||||||| | ||||| | ||||||||  ||| |||||||||||  | | ||||| |||||||||||||| ||||  || || |||||||||| |||    
T  10306987 gtttgatggtcagtataggaaaatatgatataatatattaatcatattattcataaatctcatgtttgatgcatcaaatagagagaataaaataaaccat 10306888  T
Q  778 ttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagat--tagaatatcattccttattta 875  Q
    ||  ||||  |||  ||| ||||||| || |||| |||| | |||||||||||  ||| ||| ||||  |||  |||  || || |||||| ||||||||    
T  10306887 tttcctattatatcatgattttccttcgtaatttttatcttgagtataagctgcattagaaactatcatgataggattataaaagatcatttcttattta 10306788  T
Q  876 ttatcttgatattctgttatttttaaaata 905  Q
    ||||| ||||||| ||| ||||||||||||    
T  10306787 ttatcatgatattttgtcatttttaaaata 10306758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 704 - 773
Target Start/End: Original strand, 48527377 - 48527446
Alignment:
Q  704 gatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaa 773  Q
    |||| |||| ||| |||||||| |||||||||||||||||||||||| ||||  |||| |||||||||||    
T  48527377 gatatgatatatttatcatatcttgcttaaatttcatgtttgatgcatcaaaaagatatgataaaataaa 48527446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 718 - 779
Target Start/End: Original strand, 52267631 - 52267692
Alignment:
Q  718 atcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcattt 779  Q
    ||||||| || ||||||||||||||| |||| ||||||| |||| |||||||||||||||||    
T  52267631 atcatattctacttaaatttcatgttcgatgtaccaaagagatatgataaaataaatcattt 52267692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1027 - 1063
Target Start/End: Complemental strand, 37346204 - 37346168
Alignment:
Q  1027 gttatcatgtgcgcatcaaacacatgataggattaat 1063  Q
    |||||||||||||||||||||||||||||||||||||    
T  37346204 gttatcatgtgcgcatcaaacacatgataggattaat 37346168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1027 - 1062
Target Start/End: Original strand, 52268254 - 52268289
Alignment:
Q  1027 gttatcatgtgcgcatcaaacacatgataggattaa 1062  Q
    ||||||||||||||||||||||||||||||||||||    
T  52268254 gttatcatgtgcgcatcaaacacatgataggattaa 52268289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 1027 - 1063
Target Start/End: Original strand, 19910328 - 19910364
Alignment:
Q  1027 gttatcatgtgcgcatcaaacacatgataggattaat 1063  Q
    ||||||||| |||||||||||||||||||||||||||    
T  19910328 gttatcatgggcgcatcaaacacatgataggattaat 19910364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 897 - 933
Target Start/End: Complemental strand, 49549889 - 49549853
Alignment:
Q  897 tttaaaatattgtcgtttttaaaataatgatagcatg 933  Q
    |||||||||||||| ||||||||||||||||||||||    
T  49549889 tttaaaatattgtcatttttaaaataatgatagcatg 49549853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1028 - 1059
Target Start/End: Original strand, 30952148 - 30952179
Alignment:
Q  1028 ttatcatgtgcgcatcaaacacatgataggat 1059  Q
    ||||||||||||||||||||||||||||||||    
T  30952148 ttatcatgtgcgcatcaaacacatgataggat 30952179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 852 - 921
Target Start/End: Complemental strand, 12856892 - 12856822
Alignment:
Q  852 gattagaatatcattccttatttattatcttgatattctgttatttttaa-aatattgtcgtttttaaaat 921  Q
    |||||||| ||||||| |||||||||||| ||||||| || ||||||||| |   ||||||||||||||||    
T  12856892 gattagaaaatcattctttatttattatcatgatattatgctatttttaagacgtttgtcgtttttaaaat 12856822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 691 - 816
Target Start/End: Complemental strand, 35509016 - 35508891
Alignment:
Q  691 gatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatcttat 790  Q
    |||||||||| |  ||| |||| ||| |||||||  | ||||||| ||||||||||| ||| |||  |||||||||||||||| |||||   |||| |||    
T  35509016 gatagggagacagtatatgatatatttatcatattatacttaaatctcatgtttgatccactaaatagataggataaaataaaccattttcttatcctat 35508917  T
Q  791 tttgactttcctttgtcatttatatc 816  Q
    |  ||||| ||||||| |||| ||||    
T  35508916 tacgacttgcctttgtaatttttatc 35508891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 165; Significance: 1e-87; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 165; E-Value: 1e-87
Query Start/End: Original strand, 677 - 961
Target Start/End: Original strand, 29860834 - 29861117
Alignment:
Q  677 cgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatca 776  Q
    |||||||||| | | ||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||    
T  29860834 cgtttgatggccagtatagggagacatgatatgatacattaatcatattctgcttaaatttcatgtttgatgcaccaaagagataggataaaataaacca 29860933  T
Q  777 tttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttat 876  Q
    |||| ||||| |||  |||||||||||||| ||||||||| | |||||| ||| ||||| ||||||||| |||| |||||||| ||||||||||||||||    
T  29860934 tttccctatcatatcatgactttcctttgtaatttatatcctgagtataggctaagttagaaattatcctgatgggattagaagatcattccttatttat 29861033  T
Q  877 tatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacatacc 961  Q
    |||||||||||||||  |||||| |||||||||| ||||||||||| | |||||||| ||||||||||||||| |||||||||||    
T  29861034 tatcttgatattctgccattttt-aaatattgtcatttttaaaatagttatagcatgtattttctattataattaataacatacc 29861117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 148; E-Value: 2e-77
Query Start/End: Original strand, 678 - 956
Target Start/End: Complemental strand, 33008189 - 33007914
Alignment:
Q  678 gtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcat 777  Q
    ||||||||||| ||||||||||| | |||| ||||||||||| ||||||||||||||| ||| |||||||  ||||||| ||||||||||||||||||||    
T  33008189 gtttgatggtcaggatagggagacaggatatgatacattaattatatcctgcttaaatatcacgtttgatagaccaaagggataggataaaataaatcat 33008090  T
Q  778 ttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttatt 877  Q
    || |||||| |||  |||||||||||||| |||| |||| | ||||||||||| |||| ||||||||| |||| |||||||| |||||||||||||||||    
T  33008089 tt-tctatcatatcctgactttcctttgtaatttttatcctgagtataagctgggttagaaattatcctgatgggattagaagatcattccttatttatt 33007991  T
Q  878 atcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataac 956  Q
    ||||||||||||||| ||| ||||||||||||| |||||||||||||||||| |||  | |||||||||||| ||||||    
T  33007990 atcttgatattctgtcattattaaaatattgtcatttttaaaataatgataggatg--tattctattataattaataac 33007914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 137; E-Value: 6e-71
Query Start/End: Original strand, 714 - 958
Target Start/End: Original strand, 33134090 - 33134333
Alignment:
Q  714 attaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatcttattttgactttcctttgtcatttat 813  Q
    |||||||||||||||||||||| | |||||| ||||||||||| |||||||||||||||| |||||  ||||| |||  |||||||||||||| |||| |    
T  33134090 attaatcatatcctgcttaaatcttatgtttaatgcaccaaagggataggataaaataaaccattttcctatcctatcctgactttcctttgtaatttct 33134189  T
Q  814 atcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttattatcttgatattctgttatttttaaaatattgtcgtt 913  Q
    ||||| |||||| |||  |||| |||||||||  |||  ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||    
T  33134190 atcatgagtataggctaggttagaaattatcct-atggaattagaagatcattccttatttattatcttgatattctgtcatttttaaaatattgtcatt 33134288  T
Q  914 tttaaaataatgatagcatgcattttctattataatcaataacat 958  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||    
T  33134289 tttaaaataatgatagcatgtattttctattataattaataacat 33134333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 130; E-Value: 1e-66
Query Start/End: Original strand, 678 - 955
Target Start/End: Complemental strand, 15922379 - 15922102
Alignment:
Q  678 gtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcat 777  Q
    ||||||||||| |||||| || | | |||| ||||||||||||||||| ||||||||| |||||||||||||| |||||||||| |||||||||||| ||    
T  15922379 gtttgatggtcaggatagagatacaggatatgatacattaatcatatcttgcttaaatctcatgtttgatgcatcaaagtgatatgataaaataaattat 15922280  T
Q  778 ttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttatt 877  Q
    || |||||| |||  |||||||||||||| |||| |||  | |||||  | || |||| ||||||||| |||| |||||||| |||| |||||||| |||    
T  15922279 ttttctatcatatcatgactttcctttgtaatttctattttgagtatcggttgggttagaaattatcctgatgggattagaagatcaatccttattaatt 15922180  T
Q  878 atcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataa 955  Q
    ||||||||||||||   ||||| |||||||||| |||||||||||||||||||||| ||||||||||||||| |||||    
T  15922179 atcttgatattctgcctttttttaaatattgtcatttttaaaataatgatagcatgtattttctattataattaataa 15922102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 672 - 959
Target Start/End: Original strand, 31077809 - 31078092
Alignment:
Q  672 gggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaata 771  Q
    |||| ||||| |||||| ||||||  ||||| |||| |||||||||||||||| || ||||||| | |||||||||||||||||| | ||||||||||||    
T  31077809 gggtccgtttaatggtcaggatagacagataggatatgatacattaatcatattctacttaaatctaatgtttgatgcaccaaagggttaggataaaata 31077908  T
Q  772 aatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattcctta 871  Q
    ||  ||||   |||  |||  |||||||||||||| ||||||||| | |||||||||||||||| ||||||||| |||| |||||||| |||||||||||    
T  31077909 aactattttcttattctatcatgactttcctttgtaatttatatcctgagtataagctgagttagaaattatcctgatg-gattagaagatcattcctta 31078007  T
Q  872 tttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacata 959  Q
    |||||||   ||||||| | | ||| |||||||||| || | |||||||||| ||||||||| ||||||||||||||| |||||||||    
T  31078008 tttatta---tgatattttatcattcttaaaatattttcatatttaaaataacgatagcatgtattttctattataattaataacata 31078092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 112; E-Value: 5e-56
Query Start/End: Original strand, 678 - 905
Target Start/End: Complemental strand, 7883969 - 7883742
Alignment:
Q  678 gtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcat 777  Q
    ||||||||||| ||||||||||| | |||| ||||||||||||||||||||||||||| | |||||||||||| ||||| |||||||||||||||| |||    
T  7883969 gtttgatggtcaggatagggagacaggatatgatacattaatcatatcctgcttaaatcttatgtttgatgcatcaaagggataggataaaataaaccat 7883870  T
Q  778 ttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttatt 877  Q
    ||  ||||| |||| ||| |||||||||| |||| |||  | |||||| ||||  ||| ||||||||| |||| |||||||| |||||||||||||||||    
T  7883869 tttcctatcctattctgaatttcctttgtaatttctattctgagtataggctggattagaaattatcctgatgggattagaagatcattccttatttatt 7883770  T
Q  878 atcttgatattctgttatttttaaaata 905  Q
    ||||| ||||||||  ||||||||||||    
T  7883769 atctttatattctgccatttttaaaata 7883742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 716 - 958
Target Start/End: Complemental strand, 25347219 - 25346967
Alignment:
Q  716 taatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatcttattttgactttcctttgtcatttatat 815  Q
    |||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||| |||||  ||||| |||  ||| |||||||||| |||| |||    
T  25347219 taatcatatcctccttaaatctcatgtttgatgcaccaaagggataggataaaataaaccattttcctatcatatcctgattttcctttgtaatttctat 25347120  T
Q  816 cataagtataagct----------gagttataaattatccagatgagattagaatatcattccttatttattatcttgatattctgttatttttaaaata 905  Q
    ||| ||||||||||          | |||| ||||||||| || | |||||||| ||||||  ||||||| |||||||||||| ||  ||||||||||||    
T  25347119 cattagtataagctagtataagatgggttagaaattatcctgacgggattagaacatcattttttatttactatcttgatattatgccatttttaaaata 25347020  T
Q  906 ttgtcgtttttaaaataatgatagcatgcattttctattataatcaataacat 958  Q
    ||||| |||||||||||||||||||||| |||||| ||| |||| ||||||||    
T  25347019 ttgtcatttttaaaataatgatagcatgtattttccattgtaattaataacat 25346967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 95; E-Value: 7e-46
Query Start/End: Original strand, 671 - 905
Target Start/End: Complemental strand, 5868472 - 5868239
Alignment:
Q  671 agggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaat 770  Q
    ||||| |||||||||||| ||||||||||| | |||| |||| |||||||| ||||| ||||||| |||||||||||||||||||| |||||||||||||    
T  5868472 agggtccgtttgatggtcaggatagggagacaagatatgatatattaatcacatcctacttaaatctcatgtttgatgcaccaaagagataggataaaat 5868373  T
Q  771 aaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattcctt 870  Q
    ||| |||||  ||||| |||   ||||||||||||| |||| |||| | |||||  |||| |||| ||| ||||| |||| | |||||| ||||||| ||    
T  5868372 aaaccattttcctatcctatcccgactttcctttgtaatttctatcttgagtattggctgggttagaaactatcctgatg-ggttagaagatcattcgtt 5868274  T
Q  871 atttattatcttgatattctgttatttttaaaata 905  Q
    |||||||||| ||||||||||  ||||||||||||    
T  5868273 atttattatcgtgatattctgccatttttaaaata 5868239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 81; E-Value: 2e-37
Query Start/End: Original strand, 671 - 811
Target Start/End: Complemental strand, 42684114 - 42683974
Alignment:
Q  671 agggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaat 770  Q
    |||||||||||||||||  ||||||||||| |||||| ||||||||||||||||||||||||||| |||||||| | ||| ||||| |||| ||||||||    
T  42684114 agggttcgtttgatggttaggatagggagacatgatatgatacattaatcatatcctgcttaaatctcatgtttcaagcatcaaagggataagataaaat 42684015  T
Q  771 aaatcatttctctatcttattttgactttcctttgtcattt 811  Q
    ||||||||| |||||| |||  |||||||||||||| ||||    
T  42684014 aaatcatttttctatcatatcctgactttcctttgtaattt 42683974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 77; E-Value: 4e-35
Query Start/End: Original strand, 715 - 882
Target Start/End: Complemental strand, 21092537 - 21092372
Alignment:
Q  715 ttaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatcttattttgactttcctttgtcatttata 814  Q
    |||||||||||||| ||||||||||||||||||||||||||  |||||||||||||   ||||||  |||| ||||  | |||||||| ||| |||| ||    
T  21092537 ttaatcatatcctgtttaaatttcatgtttgatgcaccaaatggataggataaaatc--tcattttcctatattatcctcactttcctatgtaatttcta 21092440  T
Q  815 tcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttattatctt 882  Q
    || | | ||||| |||||||||||||||||| |||||||||||||||||||| |||||| ||||||||    
T  21092439 tcctgaatataaactgagttataaattatcctgatgagattagaatatcatttcttattcattatctt 21092372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 55; E-Value: 6e-22
Query Start/End: Original strand, 690 - 816
Target Start/End: Original strand, 2498915 - 2499041
Alignment:
Q  690 ggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatctta 789  Q
    |||||| ||||  ||||| |||| ||||||||||| || ||||||| |||||||||||||||| ||| |||| | ||||||||||||||| |||||||||    
T  2498915 ggatagagagacgtgatatgatatattaatcatattctacttaaatatcatgtttgatgcacccaagagatatggtaaaataaatcatttttctatctta 2499014  T
Q  790 ttttgactttcctttgtcatttatatc 816  Q
    | |||||| | |||||| |||| ||||    
T  2499015 tcttgactattctttgtaatttttatc 2499041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 894 - 958
Target Start/End: Complemental strand, 21091242 - 21091178
Alignment:
Q  894 atttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacat 958  Q
    |||||| |||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||    
T  21091242 atttttgaaatattgtcatttttaaaataatgatagcatgtattttctattataattaataacat 21091178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1027 - 1063
Target Start/End: Complemental strand, 25346898 - 25346862
Alignment:
Q  1027 gttatcatgtgcgcatcaaacacatgataggattaat 1063  Q
    |||||||||||||||||||||||||||||||||||||    
T  25346898 gttatcatgtgcgcatcaaacacatgataggattaat 25346862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1027 - 1063
Target Start/End: Original strand, 33134402 - 33134438
Alignment:
Q  1027 gttatcatgtgcgcatcaaacacatgataggattaat 1063  Q
    |||||||||||||||||||||||||||||||||||||    
T  33134402 gttatcatgtgcgcatcaaacacatgataggattaat 33134438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1027 - 1062
Target Start/End: Complemental strand, 21091109 - 21091074
Alignment:
Q  1027 gttatcatgtgcgcatcaaacacatgataggattaa 1062  Q
    ||||||||||||||||||||||||||||||||||||    
T  21091109 gttatcatgtgcgcatcaaacacatgataggattaa 21091074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 1027 - 1063
Target Start/End: Original strand, 31078184 - 31078220
Alignment:
Q  1027 gttatcatgtgcgcatcaaacacatgataggattaat 1063  Q
    |||||||||||||||||||||||||||||| ||||||    
T  31078184 gttatcatgtgcgcatcaaacacatgatagaattaat 31078220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 1027 - 1063
Target Start/End: Original strand, 39351585 - 39351621
Alignment:
Q  1027 gttatcatgtgcgcatcaaacacatgataggattaat 1063  Q
    ||||||||||||||||||||||||||||| |||||||    
T  39351585 gttatcatgtgcgcatcaaacacatgatatgattaat 39351621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 894 - 958
Target Start/End: Complemental strand, 42683912 - 42683848
Alignment:
Q  894 atttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacat 958  Q
    |||||||||||||||||  ||| |||||||| ||| |||  ||||||||||||||| ||||||||    
T  42683912 atttttaaaatattgtcaatttcaaaataataataacatatattttctattataattaataacat 42683848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1027 - 1064
Target Start/End: Complemental strand, 33007843 - 33007806
Alignment:
Q  1027 gttatcatgtgcgcatcaaacacatgataggattaata 1064  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  33007843 gttatcatgtgtgcatcaaacacatgatatgattaata 33007806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 158; Significance: 2e-83; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 158; E-Value: 2e-83
Query Start/End: Original strand, 671 - 956
Target Start/End: Complemental strand, 40619897 - 40619612
Alignment:
Q  671 agggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaat 770  Q
    ||||| |||||||||||| |||||| |||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||    
T  40619897 agggtgcgtttgatggtcaggatagagagataggatatgatacattaatcatatcctgcttaaatctcatgtttgatgcaccaaagggatatgataaaat 40619798  T
Q  771 aaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattcctt 870  Q
    ||| ||||| |||||| |||  ||||||||||| || |||| |||| | |||||| | || |||| ||||||| |  ||| |||||||| ||||||||||    
T  40619797 aaaccatttttctatcatatcctgactttccttcgtaatttctatcctgagtataggttgggttagaaattatacttatgggattagaagatcattcctt 40619698  T
Q  871 atttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataac 956  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||| ||||||    
T  40619697 atttattaccttgatattctgttatttttaaaatattgtcatttttaaaataatgatagcatgtattttttattataattaataac 40619612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 146; E-Value: 3e-76
Query Start/End: Original strand, 709 - 958
Target Start/End: Original strand, 41595239 - 41595488
Alignment:
Q  709 gatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatcttattttgactttcctttgtca 808  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||| ||| |||||||||||| ||| | |||||| |||| ||||||||| |||| |    
T  41595239 gatacattaatcatatcgtgcttaaatctcatgtttgatgcaccaaagagattggataaaataaaccatatttctatcatattctgactttccattgtaa 41595338  T
Q  809 tttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttattatcttgatattctgttatttttaaaatattg 908  Q
    ||| |||| | |||||||| ||||||| ||||||||| |||| |||||||| ||||||  |||||||||||||||||||||| | |||||||||||||||    
T  41595339 tttctatcctgagtataagttgagttagaaattatcctgatgggattagaagatcattttttatttattatcttgatattctttcatttttaaaatattg 41595438  T
Q  909 tcgtttttaaaataatgatagcatgcattttctattataatcaataacat 958  Q
    || |||||||||||||||||||||| ||||||||||||||| ||||||||    
T  41595439 tcatttttaaaataatgatagcatgtattttctattataattaataacat 41595488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 137; E-Value: 6e-71
Query Start/End: Original strand, 670 - 954
Target Start/End: Complemental strand, 13996355 - 13996071
Alignment:
Q  670 aagggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaa 769  Q
    |||||| |||||||||||| ||||||| |||   |||| ||||||||||| ||||||| ||||||| |||||||||||||||||||| || | |||||||    
T  13996355 aagggtgcgtttgatggtcaggataggaagacgggatatgatacattaattatatcctccttaaatctcatgtttgatgcaccaaagggacatgataaaa 13996256  T
Q  770 taaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattcct 869  Q
    |||||||| | |||||| |||  |||||||||||||| |||| |||| | |||||||| || |||| ||||||||| |||| |||||||| |||||||||    
T  13996255 taaatcatgtttctatcatatcctgactttcctttgtaatttctatcctgagtataagttgggttagaaattatcctgatgggattagaagatcattcct 13996156  T
Q  870 tatttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaata 954  Q
    |||||||||| ||||||||||   ||||| ||||||||||| |||||||||||||||||||||| |||| |||||||||| ||||    
T  13996155 tatttattattttgatattcttccattttaaaaatattgtcatttttaaaataatgatagcatgtatttcctattataattaata 13996071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 124; E-Value: 4e-63
Query Start/End: Original strand, 690 - 958
Target Start/End: Original strand, 27338700 - 27338958
Alignment:
Q  690 ggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatctta 789  Q
    ||||||||||||| |||| ||||||||||||||||||| ||||||| ||||||||||||||| ||| ||||| ||||||||||| ||||| |||||| ||    
T  27338700 ggatagggagataggatatgatacattaatcatatcctacttaaatctcatgtttgatgcactaaaatgatatgataaaataaaccatttttctatccta 27338799  T
Q  790 ttttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttattatcttgatattc 889  Q
    |  |||||||||||||| |||| ||            ||||||||| |||| |||| |||| ||||| ||||||||||||||||||||||||||||||||    
T  27338800 tcctgactttcctttgtaatttttag-----------gctgagttagaaatgatcctgatgggattataatatcattccttatttattatcttgatattc 27338888  T
Q  890 tgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctatt-ataatcaataacat 958  Q
    ||| |||||||||||||| || |||||||||||||||||||||| |||||||||| ||||| ||||||||    
T  27338889 tgtcatttttaaaatattatcatttttaaaataatgatagcatgtattttctattaataattaataacat 27338958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 119; E-Value: 4e-60
Query Start/End: Original strand, 671 - 944
Target Start/End: Complemental strand, 13349702 - 13349429
Alignment:
Q  671 agggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaat 770  Q
    ||||| |||||||| ||| ||||||| ||| | |||| ||||||||||| ||||||| ||||||| |||||||||||||||||||  |||||||||||||    
T  13349702 agggtccgtttgatagtcaggataggaagacaggatatgatacattaattatatcctacttaaatctcatgtttgatgcaccaaatggataggataaaat 13349603  T
Q  771 aaatcat-ttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattcct 869  Q
    |||  || |||| |||| | |  | |||||||||||| |||| |||| |||||||| | ||||||| ||||||||| |||| |||||||| |||||||||    
T  13349602 aaacaatattct-tatcctctcctaactttcctttgtaatttctatcctaagtatatgatgagttagaaattatcctgatgcgattagaagatcattcct 13349504  T
Q  870 tatttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctatt 944  Q
    ||||||||||||||||||||||  |||||| ||||||| || |||||||||||||||||| ||| ||||||||||    
T  13349503 tatttattatcttgatattctgccattttttaaatattatcatttttaaaataatgatagaatgtattttctatt 13349429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 794 - 959
Target Start/End: Original strand, 19695769 - 19695932
Alignment:
Q  794 gactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttattatcttgatattctgtt 893  Q
    |||||| |||||| |||| |||| | |||||||||||||||| ||||||||| ||||  ||||||| ||||| |||||||||||||||||||||||  |     
T  19695769 gacttttctttgtaatttctatcttgagtataagctgagttagaaattatcctgatggaattagaagatcatcccttatttattatcttgatattc--tc 19695866  T
Q  894 atttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacata 959  Q
    |||||||||||||||||  ||||||||||||||||||||  ||||||||||||||| |||||||||    
T  19695867 atttttaaaatattgtcacttttaaaataatgatagcatatattttctattataattaataacata 19695932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 73; E-Value: 1e-32
Query Start/End: Original strand, 671 - 858
Target Start/End: Original strand, 37485562 - 37485746
Alignment:
Q  671 agggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaat 770  Q
    |||||||||||||||||  |||||| |||| | ||||  ||| |||||||||||||||||||||| |||||||||||||||||||  |||| ||||||||    
T  37485562 agggttcgtttgatggta-ggatagagagacaagatataatatattaatcatatcctgcttaaatctcatgtttgatgcaccaaaaagatatgataaaat 37485660  T
Q  771 aaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattaga 858  Q
    ||| |||||  ||||| |||  |||||||||||||| |||| ||||||  | ||| ||||||||| ||||||||| |||| |||||||    
T  37485661 aaaccattttcctatcatatcctgactttcctttgtaatttctatcat--gaatatgctgagttagaaattatcctgatgggattaga 37485746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 671 - 785
Target Start/End: Original strand, 19695466 - 19695580
Alignment:
Q  671 agggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaat 770  Q
    ||||| ||||||||| || |||||| |||| | |||| ||||||||||||||||||| | ||||| |||||||||||||||||||  |||||| || |||    
T  19695466 agggtgcgtttgatgatcaggatagagagacaggatatgatacattaatcatatcctacgtaaatctcatgtttgatgcaccaaatggataggctagaat 19695565  T
Q  771 aaatcatttctctat 785  Q
    ||| ||||| |||||    
T  19695566 aaaccatttttctat 19695580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 895 - 958
Target Start/End: Original strand, 37485757 - 37485820
Alignment:
Q  895 tttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacat 958  Q
    ||||| ||||||| || ||||||||||||||||| |||| ||||||||||||||| ||||||||    
T  37485757 ttttttaaatattttcatttttaaaataatgataacatgtattttctattataattaataacat 37485820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1028 - 1063
Target Start/End: Complemental strand, 13995584 - 13995549
Alignment:
Q  1028 ttatcatgtgcgcatcaaacacatgataggattaat 1063  Q
    ||||||||||||||||||||||||||||||||||||    
T  13995584 ttatcatgtgcgcatcaaacacatgataggattaat 13995549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 793 - 888
Target Start/End: Original strand, 34355880 - 34355975
Alignment:
Q  793 tgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttattatcttgatatt 888  Q
    |||||| ||||||| |||| ||||   |||||||| ||  |||||||||| ||||||  ||||||||  ||||||||||||||||||| |||||||    
T  34355880 tgacttgcctttgtaatttttatcccgagtataagttggattataaattacccagataggattagaaattcattccttatttattatcatgatatt 34355975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 1027 - 1063
Target Start/End: Original strand, 27339027 - 27339063
Alignment:
Q  1027 gttatcatgtgcgcatcaaacacatgataggattaat 1063  Q
    ||||||||||||||||||||||||||||| |||||||    
T  27339027 gttatcatgtgcgcatcaaacacatgatatgattaat 27339063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 853 - 928
Target Start/End: Complemental strand, 15665417 - 15665342
Alignment:
Q  853 attagaatatcattccttatttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgata 928  Q
    ||||||| || |||| |||||||||||| |||| || ||| ||||||||||| ||| | |||||||||||| ||||    
T  15665417 attagaagataattctttatttattatcatgattttttgtcatttttaaaatgttgacatttttaaaataacgata 15665342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1027 - 1065
Target Start/End: Complemental strand, 40619541 - 40619503
Alignment:
Q  1027 gttatcatgtgcgcatcaaacacatgataggattaatat 1065  Q
    |||||||||||| |||||||||||||||| |||||||||    
T  40619541 gttatcatgtgcacatcaaacacatgataagattaatat 40619503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 141; Significance: 3e-73; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 141; E-Value: 3e-73
Query Start/End: Original strand, 678 - 958
Target Start/End: Original strand, 43596799 - 43597079
Alignment:
Q  678 gtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcat 777  Q
    ||||||||| | ||||||||||  | |||| ||||||||||||||||||  ||||||| ||||||||||||||| |||| ||||||||||||||||||||    
T  43596799 gtttgatggccaggatagggagtcaggatatgatacattaatcatatccgacttaaatatcatgtttgatgcacgaaagagataggataaaataaatcat 43596898  T
Q  778 ttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttatt 877  Q
    || |||||| |||   ||||||||||||| ||||||||| | ||||||   ||||||| ||||||||| ||||||||||||| |||| |||||||||||     
T  43596899 ttttctatcatatcccgactttcctttgtaatttatatcctgagtatagattgagttaaaaattatcctgatgagattagaagatcactccttatttata 43596998  T
Q  878 atcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacat 958  Q
    ||||| ||||||||  ||||||||||||||||| |||| |||||||| |||||||| ||||||||||||||| ||||||||    
T  43596999 atctttatattctgccatttttaaaatattgtcattttaaaaataatcatagcatgtattttctattataattaataacat 43597079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 132; E-Value: 6e-68
Query Start/End: Original strand, 677 - 960
Target Start/End: Original strand, 37246131 - 37246412
Alignment:
Q  677 cgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatca 776  Q
    |||||||||||   |||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||| |||  |||||||||||||||  ||    
T  37246131 cgtttgatggtaaagatagggagacatgatatgatacattaatcatatcctgcttaaatatcatgtttgatgcactaaaaagataggataaaataaccca 37246230  T
Q  777 tttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttat 876  Q
    |||| ||| | |||| |||||||||||||| ||||||||| | |||||| |||  |||| ||||||||| || | |||||||| ||||||||||||||||    
T  37246231 tttcccta-catattctgactttcctttgtaatttatatcttgagtataggctaggttagaaattatcctgaggggattagaagatcattccttatttat 37246329  T
Q  877 tatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacatac 960  Q
    |||||||||||||||  |||||| |||||||||  ||||||||||| | ||| |||| ||||||||||||||| ||||||||||    
T  37246330 tatcttgatattctgccattttt-aaatattgttatttttaaaatagttataacatgtattttctattataattaataacatac 37246412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 120; E-Value: 9e-61
Query Start/End: Original strand, 678 - 961
Target Start/End: Original strand, 16295305 - 16295586
Alignment:
Q  678 gtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcat 777  Q
    |||||||||||  ||||| |||| || ||| ||||||||||||||||||||||||||| ||||||||||||||| |||| ||||| ||| ||||||  ||    
T  16295305 gtttgatggtcaagatagagagacataatatgatacattaatcatatcctgcttaaatatcatgtttgatgcactaaagagatagcatacaataaacaat 16295404  T
Q  778 ttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttatt 877  Q
    ||| ||||| |||  |||||||||||||| ||||||||| | ||||||  ||  |||| ||||||| | |||| |||| ||| |||||||||||||||||    
T  16295405 ttccctatcatatcctgactttcctttgtaatttatatcctgagtatagactaggttagaaattat-ctgatgggattggaagatcattccttatttatt 16295503  T
Q  878 atcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacatacc 961  Q
    |||||||||||||   |||||| |||||||||| ||||||||||| | |||||||| ||||||||||||||| |||||||||||    
T  16295504 atcttgatattctaccattttt-aaatattgtcatttttaaaatagttatagcatgtattttctattataattaataacatacc 16295586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 120; E-Value: 9e-61
Query Start/End: Original strand, 678 - 961
Target Start/End: Original strand, 16303007 - 16303288
Alignment:
Q  678 gtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcat 777  Q
    |||||||||||  ||||| |||| || ||| ||||||||||||||||||||||||||| ||||||||||||||| |||| ||||| ||| ||||||  ||    
T  16303007 gtttgatggtcaagatagagagacataatatgatacattaatcatatcctgcttaaatatcatgtttgatgcactaaagagatagcatacaataaacaat 16303106  T
Q  778 ttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttatt 877  Q
    ||| ||||| |||  |||||||||||||| ||||||||| | ||||||  ||  |||| ||||||| | |||| |||| ||| |||||||||||||||||    
T  16303107 ttccctatcatatcctgactttcctttgtaatttatatcctgagtatagactaggttagaaattat-ctgatgggattggaagatcattccttatttatt 16303205  T
Q  878 atcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacatacc 961  Q
    |||||||||||||   |||||| |||||||||| ||||||||||| | |||||||| ||||||||||||||| |||||||||||    
T  16303206 atcttgatattctaccattttt-aaatattgtcatttttaaaatagttatagcatgtattttctattataattaataacatacc 16303288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 671 - 876
Target Start/End: Original strand, 32962016 - 32962221
Alignment:
Q  671 agggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaat 770  Q
    ||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| | ||||| |||||||    
T  32962016 agggtgcgtttgatggtcaggatagggagatatgatatgatacattaatcatatcctgcttaaatctcatgtttgatgcaccaatgggatagaataaaat 32962115  T
Q  771 aaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattcctt 870  Q
    |||  ||||  ||||| |||  |||||||||||||| |||| |||| | |||| ||||||||||||||||||||| ||||||||||||| |||||||||     
T  32962116 aaactattttcctatcatatcctgactttcctttgtaatttctatcctgagtacaagctgagttataaattatcctgatgagattagaagatcattcctc 32962215  T
Q  871 atttat 876  Q
    ||||||    
T  32962216 atttat 32962221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 677 - 958
Target Start/End: Original strand, 15268592 - 15268873
Alignment:
Q  677 cgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatca 776  Q
    |||||||||||| ||||| ||||| | |||| |||||||||||||||||||||| |||| ||||||||||| || ||||  |||||||||||||||| ||    
T  15268592 cgtttgatggtcaggataaggagacaggatatgatacattaatcatatcctgctgaaatctcatgtttgatacaacaaatggataggataaaataaacca 15268691  T
Q  777 tttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttat 876  Q
    |||  ||||| |||   ||||||||||||| |||| |||  |||||||| |||| |||| |||||||||  ||| ||||| || ||| ||||||||||||    
T  15268692 ttttcctatcctatcccgactttcctttgtaatttttattctaagtatatgctgggttagaaattatcctaatg-gattaaaagatcgttccttatttat 15268790  T
Q  877 tatcttgatattctgttatttttaaaatattgtc-gtttttaaaataatgatagcatgcattttctattataatcaataacat 958  Q
    ||||||||||||||   |||| ||||||| |||| || |||||||||||||||||||| ||||||||||||||| ||| ||||    
T  15268791 tatcttgatattctaccatttataaaatactgtcagtgtttaaaataatgatagcatgtattttctattataattaatcacat 15268873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 107; E-Value: 5e-53
Query Start/End: Original strand, 727 - 955
Target Start/End: Original strand, 27696248 - 27696473
Alignment:
Q  727 tgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataa 826  Q
    ||||||||| |||||||||||||||||||  |||| |||||||||||  ||||  ||||||||| |||| |   |||||| ||||||||| |  ||||||    
T  27696248 tgcttaaatctcatgtttgatgcaccaaatggatatgataaaataaactattttcctatcttatcttgatt---ctttgtaatttatatcctgtgtataa 27696344  T
Q  827 gctgagttataaattatccagatgagattagaatatcattccttatttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatga 926  Q
    |||  |||| ||||||||  |||| |||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||    
T  27696345 gctaggttagaaattatcttgatgggattaggagatcattccttatttattatcttgatattctgtcatttttaaaatattgttatttttaaaataatga 27696444  T
Q  927 tagcatgcattttctattataatcaataa 955  Q
    ||||||| ||||||||||||||| |||||    
T  27696445 tagcatgtattttctattataattaataa 27696473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 102; E-Value: 5e-50
Query Start/End: Original strand, 745 - 958
Target Start/End: Original strand, 40953263 - 40953476
Alignment:
Q  745 gatgcaccaaagtgataggataaaataaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatc 844  Q
    |||||||||||| |||| ||| ||||||||||||| |||||| |||  |||||||||||||| |||| |||| | |||||| |||| |||| |||||||     
T  40953263 gatgcaccaaagagatatgatgaaataaatcatttttctatcatatcctgactttcctttgtaatttttatcctgagtataggctgggttagaaattatt 40953362  T
Q  845 cagatgagattagaatatcattccttatttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctatt 944  Q
       ||| |||||||| |||||||||||||||||| ||||||||||||   |||||||||||||||| |||||||||||||||||||||| ||||| ||||    
T  40953363 ataatgggattagaagatcattccttatttattaccttgatattctgccctttttaaaatattgtcatttttaaaataatgatagcatgtattttttatt 40953462  T
Q  945 ataatcaataacat 958  Q
    ||||| ||||||||    
T  40953463 ataattaataacat 40953476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 81; E-Value: 2e-37
Query Start/End: Original strand, 765 - 949
Target Start/End: Complemental strand, 11656454 - 11656270
Alignment:
Q  765 taaaataaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatca 864  Q
    ||||||||| ||||| |||||| |||  |||||||||||||| |||| |||| | | |||| | || |||| |||||||||  |||||||||||| ||||    
T  11656454 taaaataaaccatttttctatcctatcctgactttcctttgtaatttctatcctgaatataggttgggttagaaattatcctaatgagattagaagatca 11656355  T
Q  865 ttccttatttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataat 949  Q
    ||||||||||||| |||| |||||||   ||||| ||||||||||| |||||||||||||||||||||| | |||||||||||||    
T  11656354 ttccttatttattgtcttaatattctaccattttgaaaatattgtcatttttaaaataatgatagcatgtaatttctattataat 11656270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 671 - 905
Target Start/End: Original strand, 16456456 - 16456690
Alignment:
Q  671 agggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaat 770  Q
    |||||||||||||||||| ||||| |||||    ||| |||| || |||||||| || ||||||| |||||||||||||||||||| |||| ||||||||    
T  16456456 agggttcgtttgatggtcaggataaggagacgaaatatgatatatcaatcatattctacttaaatatcatgtttgatgcaccaaagagataagataaaat 16456555  T
Q  771 aaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagatt-agaatatcattcct 869  Q
    |||  |||| | |||| |||  ||| || | ||||| |||  |||| | ||||||||||  |||| ||||||||  |||  |||| | ||||| ||| ||    
T  16456556 aaactatttttttatcctatcctgatttgcttttgtaattcttatcttgagtataagctacgttagaaattatcttgataggattaaaaatat-atttct 16456654  T
Q  870 tatttattatcttgatattctgttatttttaaaata 905  Q
    ||||||| ||| ||| ||||||| ||||||||||||    
T  16456655 tatttatgatcatgacattctgtcatttttaaaata 16456690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 709 - 773
Target Start/End: Complemental strand, 11657067 - 11657003
Alignment:
Q  709 gatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaa 773  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||| |||| |||||||||||    
T  11657067 gatacattaatcatatcctgcttaaatctcatgtttgatgtaccaaagggatatgataaaataaa 11657003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 714 - 843
Target Start/End: Complemental strand, 8491176 - 8491048
Alignment:
Q  714 attaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatcttattttgactttcctttgtcatttat 813  Q
    |||||||||||| || |||||| |||| ||||||| | ||||| |||| ||||||||||||||||| ||||||||| | | |||| | ||||| |||| |    
T  8491176 attaatcatatcttgtttaaatatcatatttgatgtatcaaagagatatgataaaataaatcattt-tctatcttactctcacttgcatttgtaattttt 8491078  T
Q  814 atcataagtataagctgagttataaattat 843  Q
    ||| | || ||||| ||||||| |||||||    
T  8491077 atcttgagaataagttgagttagaaattat 8491048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 670 - 733
Target Start/End: Original strand, 42180461 - 42180524
Alignment:
Q  670 aagggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaa 733  Q
    |||||| |||||||||||| ||||||||||| |  ||| |||||||||||||||||| ||||||    
T  42180461 aagggtgcgtttgatggtcaggatagggagacagaatatgatacattaatcatatccagcttaa 42180524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 710 - 755
Target Start/End: Original strand, 511650 - 511695
Alignment:
Q  710 atacattaatcatatcctgcttaaatttcatgtttgatgcaccaaa 755  Q
    ||||||| || ||||||||||| |||||||||||||||||||||||    
T  511650 atacatttattatatcctgcttgaatttcatgtttgatgcaccaaa 511695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 1027 - 1063
Target Start/End: Original strand, 3174233 - 3174269
Alignment:
Q  1027 gttatcatgtgcgcatcaaacacatgataggattaat 1063  Q
    |||||||||| ||||||||||||||||||||||||||    
T  3174233 gttatcatgtacgcatcaaacacatgataggattaat 3174269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 1027 - 1063
Target Start/End: Original strand, 40953545 - 40953581
Alignment:
Q  1027 gttatcatgtgcgcatcaaacacatgataggattaat 1063  Q
    ||||||||||||||||||||||||||||| |||||||    
T  40953545 gttatcatgtgcgcatcaaacacatgatatgattaat 40953581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1028 - 1059
Target Start/End: Original strand, 23586059 - 23586090
Alignment:
Q  1028 ttatcatgtgcgcatcaaacacatgataggat 1059  Q
    ||||||||||||||||||||||||||||||||    
T  23586059 ttatcatgtgcgcatcaaacacatgataggat 23586090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 841 - 888
Target Start/End: Complemental strand, 35010734 - 35010687
Alignment:
Q  841 tatccagatgagattagaatatcattccttatttattatcttgatatt 888  Q
    ||||| |||||||||| || ||||||||||||||||||||||| ||||    
T  35010734 tatcccgatgagattaaaagatcattccttatttattatcttgctatt 35010687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 138; Significance: 2e-71; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 138; E-Value: 2e-71
Query Start/End: Original strand, 669 - 958
Target Start/End: Complemental strand, 28457982 - 28457698
Alignment:
Q  669 caagggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaa 768  Q
    ||||||| |||||||||||| ||||||||||| | |||| ||||||||||||||||||||||||||| |  |||||||||||||||||||||| ||||||    
T  28457982 caagggtccgtttgatggtcaggatagggagacaggatatgatacattaatcatatcctgcttaaatcttgtgtttgatgcaccaaagtgatatgataaa 28457883  T
Q  769 ataaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattcc 868  Q
    ||||| ||||| ||||||||||    |||||||||||| |||| |||| | ||      ||| |||| || |||||| |||| |||||||| ||||||||    
T  28457882 ataaaccatttttctatcttatcccaactttcctttgtaatttctatcctgag-----actgggttagaagttatcctgatgggattagaagatcattcc 28457788  T
Q  869 ttatttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacat 958  Q
    |||||||||||||||||||  ||  ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||    
T  28457787 ttatttattatcttgatatattgccatttttaaaatattgtcatttttaaaataatgatagcatgcattttctattataattactaacat 28457698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 125; E-Value: 9e-64
Query Start/End: Original strand, 670 - 958
Target Start/End: Complemental strand, 40701228 - 40700941
Alignment:
Q  670 aagggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaa 769  Q
    |||||| |||||||||||| ||||||  ||| | |||| ||||||||||||||||||||||||||| ||||||||||||| |||||   ||| |||||||    
T  40701228 aagggtccgtttgatggtcaggatagaaagacaggatatgatacattaatcatatcctgcttaaatctcatgtttgatgctccaaaagtatatgataaaa 40701129  T
Q  770 taaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattcct 869  Q
    |||| ||||| ||| || |||  |||||||||||||| |||| |||| | ||||||||||| |||| ||||||||| |||  ||||| || |||||||||    
T  40701128 taaaccatttttctgtcatatcctgactttcctttgtaatttttatcctgagtataagctgtgttagaaattatcctgataggattataagatcattcct 40701029  T
Q  870 tatttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacat 958  Q
    ||||||| ||||||||||| ||  ||||| |||||||||||  ||||||| ||||||||||||| ||||||||||||||| ||||||||    
T  40701028 tatttatcatcttgatattatgacattttaaaaatattgtc-attttaaattaatgatagcatgtattttctattataattaataacat 40700941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 696 - 905
Target Start/End: Complemental strand, 21748571 - 21748362
Alignment:
Q  696 ggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatcttattttga 795  Q
    ||||| |||||| |||||||||||||||| |||||||||| ||||||||||||||||||| ||||| |||||||| || |||||  ||||| |||| |||    
T  21748571 ggagacatgatatgatacattaatcatattctgcttaaatctcatgtttgatgcaccaaaatgatatgataaaattaaccattttcctatcctattatga 21748472  T
Q  796 ctttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttattatcttgatattctgttat 895  Q
     |||||||||| |||| |||| |||||||| |||| |||| ||||||||| ||||||||||||| | |||||||||||||||||||||||||||||  ||    
T  21748471 ttttcctttgtaatttctatcctaagtataggctgggttaaaaattatcctgatgagattagaagaccattccttatttattatcttgatattctgccat 21748372  T
Q  896 ttttaaaata 905  Q
    ||||||||||    
T  21748371 ttttaaaata 21748362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 4e-29
Query Start/End: Original strand, 671 - 877
Target Start/End: Original strand, 33072584 - 33072790
Alignment:
Q  671 agggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaat 770  Q
    ||||| |||||||| ||| ||||||||||| |  ||| |||||||||||||||||||  ||||||||||||||||||||||| |||  ||| ||||||||    
T  33072584 agggtgcgtttgatagtcaggatagggagacaaaatatgatacattaatcatatcctatttaaatttcatgtttgatgcacctaaggaatatgataaaat 33072683  T
Q  771 aaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattcctt 870  Q
    ||| |||||  ||||| |||  | | |||||||||| |||| |||| | |||||| |||  |||| ||||||||  |||  ||||| || ||||||||||    
T  33072684 aaaccattttcctatcatatcctaagtttcctttgtaatttctatcctgagtataggctaggttagaaattatcatgataggattataagatcattcctt 33072783  T
Q  871 atttatt 877  Q
    |||||||    
T  33072784 atttatt 33072790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 6e-28
Query Start/End: Original strand, 677 - 825
Target Start/End: Complemental strand, 7818611 - 7818464
Alignment:
Q  677 cgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatca 776  Q
    ||||||||||||  |||||||| |||||||| |||||||||||||||| |||||||||| ||||||||||| ||| |||| ||||| |||||||||| ||    
T  7818611 cgtttgatggtcaagatagggatatatgatatgatacattaatcatattctgcttaaatctcatgtttgatacactaaagagatagaataaaataaa-ca 7818513  T
Q  777 tttctctatcttattttgactttcctttgtcatttatatcataagtata 825  Q
    |||  ||||| |||| | |||||||||||| |||| |||| ||| ||||    
T  7818512 ttttactatcctattctaactttcctttgtaatttctatcctaaatata 7818464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 677 - 903
Target Start/End: Complemental strand, 45853299 - 45853075
Alignment:
Q  677 cgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatca 776  Q
    |||||||||||| |||  |||||| |  ||| ||||||||||| ||||||| ||||||| || | |||| ||||||||||  |||  |||||||||| ||    
T  45853299 cgtttgatggtcagga--gggagacagaatatgatacattaattatatccttcttaaatctcttatttgctgcaccaaagatatataataaaataaacca 45853202  T
Q  777 tttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttat 876  Q
    |||   | || |||| ||||||||| |||| |||| |||| | |||||| |||| |||||||  ||||  |||  ||||| |||||||||||||||||||    
T  45853201 ttttcttttcctattatgactttccattgtaatttttatcgtgagtataggctgggttataatctatcttgattggattaaaatatcattccttatttat 45853102  T
Q  877 tatcttgatattctgttatttttaaaa 903  Q
    |||| ||||||||||| ||||||||||    
T  45853101 tatcgtgatattctgtcatttttaaaa 45853075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 678 - 804
Target Start/End: Original strand, 21495053 - 21495178
Alignment:
Q  678 gtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcat 777  Q
    |||||||| ||  |||||||||| |||||| |||| |||||||||||| || |||||| ||||||||||||||||||| |||||||||||||||||  ||    
T  21495053 gtttgatgatcacgatagggagacatgatatgatatattaatcatatcttg-ttaaatctcatgtttgatgcaccaaattgataggataaaataaacgat 21495151  T
Q  778 ttctctatcttattttgactttccttt 804  Q
    || |||||| ||| ||| |||||||||    
T  21495152 ttttctatcatatcttggctttccttt 21495178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 871 - 949
Target Start/End: Complemental strand, 4385035 - 4384957
Alignment:
Q  871 atttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataat 949  Q
    |||||||||| ||||||| ||||||||||||||| ||||| ||||||||||||||||| |||| ||||  |||||||||    
T  4385035 atttattatcatgatattatgttatttttaaaatgttgtcatttttaaaataatgatatcatgtatttgatattataat 4384957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 859 - 905
Target Start/End: Original strand, 21495222 - 21495268
Alignment:
Q  859 atatcattccttatttattatcttgatattctgttatttttaaaata 905  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||    
T  21495222 atatcattccttatttattatcatgatattctgtcatttttaaaata 21495268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 670 - 766
Target Start/End: Original strand, 46663163 - 46663259
Alignment:
Q  670 aagggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggata 766  Q
    ||||| ||||| ||||||| ||||| ||||| |  ||| |||||||| |||||||| || |||||| |||| ||||||||||||||  |||||||||    
T  46663163 aaggggtcgttagatggtcgggataaggagacaatatatgatacatttatcatatcatgtttaaatctcatatttgatgcaccaaacagataggata 46663259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 721 - 761
Target Start/End: Original strand, 27488469 - 27488509
Alignment:
Q  721 atatcctgcttaaatttcatgtttgatgcaccaaagtgata 761  Q
    |||||||| ||||||||||||||||||||||||||| ||||    
T  27488469 atatcctggttaaatttcatgtttgatgcaccaaagagata 27488509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 1027 - 1063
Target Start/End: Complemental strand, 40700872 - 40700836
Alignment:
Q  1027 gttatcatgtgcgcatcaaacacatgataggattaat 1063  Q
    ||||||||||| |||||||||||||||||||||||||    
T  40700872 gttatcatgtgtgcatcaaacacatgataggattaat 40700836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 676 - 779
Target Start/End: Complemental strand, 41865906 - 41865803
Alignment:
Q  676 tcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatc 775  Q
    |||||||||||   ||||||||||||| |||| |||| | | ||||||||| |||||||| |||| |||||| ||  |||| ||||  ||| ||||||||    
T  41865906 tcgtttgatggcaaggatagggagataagatatgataaaattatcatatcccgcttaaatctcatatttgattcataaaagggatataatataataaatc 41865807  T
Q  776 attt 779  Q
    ||||    
T  41865806 attt 41865803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1027 - 1060
Target Start/End: Complemental strand, 28457629 - 28457596
Alignment:
Q  1027 gttatcatgtgcgcatcaaacacatgataggatt 1060  Q
    |||||||||||||||||||||| |||||||||||    
T  28457629 gttatcatgtgcgcatcaaacatatgataggatt 28457596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1027 - 1063
Target Start/End: Complemental strand, 54819705 - 54819668
Alignment:
Q  1027 gttatcatgtgcg-catcaaacacatgataggattaat 1063  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  54819705 gttatcatgtgcgacatcaaacacatgataggattaat 54819668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 136; Significance: 3e-70; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 136; E-Value: 3e-70
Query Start/End: Original strand, 674 - 961
Target Start/End: Original strand, 23404450 - 23404736
Alignment:
Q  674 gttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaa 773  Q
    ||||| ||||||| | ||||||||||| |||||| ||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  23404450 gttcgattgatggccaggatagggagacatgatatgatacattaataatatcctgcataaatttcatgtttgatgcaccaaagagataggataaaataaa 23404549  T
Q  774 tcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatt 873  Q
     ||||||  |||| |||  |||||||||||||| ||||||||| | |||||| ||| ||||| ||||||||| |||    ||| || || |||||| |||    
T  23404550 ccatttccatatcatatcctgactttcctttgtaatttatatcttgagtataggctaagttagaaattatcctgattgacttaaaagattattcctaatt 23404649  T
Q  874 tattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacatacc 961  Q
    ||||||||||||||||||  |||||| |||||||||| ||||||||||| | |||||||| ||||||||||||||| |||||||||||    
T  23404650 tattatcttgatattctgccattttt-aaatattgtcatttttaaaatagttatagcatgtattttctattataattaataacatacc 23404736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 709 - 955
Target Start/End: Original strand, 9314806 - 9315051
Alignment:
Q  709 gatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatcttattttgactttcctttgtca 808  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||| |||| |||||  ||||| |||  |||||||||||||| |    
T  9314806 gatacattaatcatatcctgcttaaatctcatgtttgatgcaccaaatggataggataaa-taaaccattttcctatcctatcctgactttcctttgtaa 9314904  T
Q  809 tttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttattatcttgatattctgttatttttaaaatattg 908  Q
    |||  ||| | |||||| ||||| ||| ||||||||| | ||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||      
T  9314905 tttcaatcctgagtataggctgaattagaaattatcctggtgagattagaagatcattccttatttattatcttgatattctgccatttttaaaatatca 9315004  T
Q  909 tcgtttttaaaataatgatagcatgcattttctattataatcaataa 955  Q
    || |||||||||||||||||||||| ||||||||||||||| |||||    
T  9315005 tcatttttaaaataatgatagcatgtattttctattataattaataa 9315051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 130; E-Value: 1e-66
Query Start/End: Original strand, 670 - 939
Target Start/End: Original strand, 12255070 - 12255339
Alignment:
Q  670 aagggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaa 769  Q
    |||||| |||||||||||| ||||||||||| |  ||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||    
T  12255070 aagggtgcgtttgatggtcaggatagggagacagaatatgatacattaatcatatcctgcttaaatctcatgtttgatgcaccaaagggatgggataaaa 12255169  T
Q  770 taaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattcct 869  Q
    |||| |||||  ||||| |||| || ||||||||||| |||| ||   | |||||| |||| |||| ||||||||  |||| |||||||| || ||||||    
T  12255170 taaaccattttcctatcctattctgtctttcctttgtaatttctaatctgagtataggctgggttaaaaattatcatgatgggattagaagataattcct 12255269  T
Q  870 tatttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcatttt 939  Q
    |||||||||||||||||||||||  |||||||||||||||   ||||||||||||||||||||| |||||    
T  12255270 tatttattatcttgatattctgtcctttttaaaatattgttacttttaaaataatgatagcatgtatttt 12255339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 122; E-Value: 6e-62
Query Start/End: Original strand, 678 - 958
Target Start/End: Complemental strand, 10789618 - 10789337
Alignment:
Q  678 gtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaa-taaatca 776  Q
    ||||||||||| |||||  |||| |  ||| |||||||||||||||| ||||||||||||||| |||||||||| | || |||| ||||||| |||| ||    
T  10789618 gtttgatggtcaggataaagagacagaatatgatacattaatcatattctgcttaaatttcatatttgatgcacgagagagataagataaaaataaacca 10789519  T
Q  777 tttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttat 876  Q
    |||   ||| ||||  ||| |||||||||| |||| ||||   |||||| | || |||||||||||| | |||| ||||| |||||||||||||||||||    
T  10789518 ttttcttattttatcctgattttcctttgtaatttctatccagagtataggttgggttataaattattctgatgggattataatatcattccttatttat 10789419  T
Q  877 tatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacat 958  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||| ||||||||    
T  10789418 tatcttgatattctgctatttttaaaatattgtcatttttaaaataataatagcatgtattttctattataattaataacat 10789337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 122; E-Value: 6e-62
Query Start/End: Original strand, 671 - 958
Target Start/End: Complemental strand, 29979597 - 29979314
Alignment:
Q  671 agggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaat 770  Q
    ||||| |||||||||||| |||| |||||| | || | ||||||||||||||||| || |||||| |||||||||||||||||||| |||| ||||||||    
T  29979597 agggtccgtttgatggtcaggatcgggagaca-gaaatgatacattaatcatatcatgtttaaatctcatgtttgatgcaccaaagggatatgataaaat 29979499  T
Q  771 aaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattcctt 870  Q
    ||| |||||  ||||| |||| ||| |||||||||| |||| |||| | ||||   |||| |||| ||||||| |   |||||||| || ||||||||||    
T  29979498 aaaccattttcctatcatattatgattttcctttgtaatttctatcctgagtaccggctgggttagaaattattc---tgagattaaaagatcattcctt 29979402  T
Q  871 atttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacat 958  Q
    ||||||||||||||||||||   ||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||| ||||||||    
T  29979401 atttattatcttgatattctaccatttttaaaatattgtcatttttaaaataatgatagcatgtattttctatcataattaataacat 29979314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 102; E-Value: 5e-50
Query Start/End: Original strand, 677 - 961
Target Start/End: Original strand, 32329317 - 32329590
Alignment:
Q  677 cgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatca 776  Q
    |||||||||||| ||||||||||  |  ||| |||||||||||| ||| ||| ||||||  ||||||||||||||||||| |||| ||||||||||| ||    
T  32329317 cgtttgatggtcaggatagggaggcagaatatgatacattaatcgtattctgtttaaatcgcatgtttgatgcaccaaag-gatatgataaaataaacca 32329415  T
Q  777 tttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttat 876  Q
    |||   ||||||||  |||||||||||||| ||||||||| | | |||| |||| |||| |||||||          |||||| ||||||||||||||||    
T  32329416 ttttcatatcttatcctgactttcctttgtaatttatatcctgaatatatgctgggttagaaattat----------ttagaagatcattccttatttat 32329505  T
Q  877 tatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacatacc 961  Q
    ||| ||||||||||   ||||| ||||||||||| |||||||||| ||||||||||| ||||||||||||||| |||||||||||    
T  32329506 tatgttgatattctaccattttgaaaatattgtcatttttaaaatgatgatagcatgtattttctattataattaataacatacc 32329590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 4e-26
Query Start/End: Original strand, 728 - 928
Target Start/End: Complemental strand, 24660938 - 24660738
Alignment:
Q  728 gcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatcttattttgacttt-cctttgtcatttatatcataagtataa 826  Q
    |||||||| |||| |||||| |||||||| |||| |||||| |||| ||||| |||||  ||| |||  ||| ||||||| |||| |||| | |||||||    
T  24660938 gcttaaatctcatatttgatacaccaaagagatatgataaattaaaccatttttctatactatcttggtttttcctttgtaatttgtatcctgagtataa 24660839  T
Q  827 gctgagttataaattatccagatgagattagaatatcattccttatttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatga 926  Q
    |||||||||  || ||||| ||   |||||||| || || |||||||||||||| ||||||||| | ||||||||||| ||||| |||||||||||||||    
T  24660838 gctgagttaggaactatcctgaaaggattagaaaat-ataccttatttattatcatgatattctatcatttttaaaatgttgtcatttttaaaataatga 24660740  T
Q  927 ta 928  Q
    ||    
T  24660739 ta 24660738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 852 - 905
Target Start/End: Complemental strand, 391289 - 391236
Alignment:
Q  852 gattagaatatcattccttatttattatcttgatattctgttatttttaaaata 905  Q
    |||||||| |||||||||||||||||||||||||||| ||  ||||||||||||    
T  391289 gattagaagatcattccttatttattatcttgatattttgccatttttaaaata 391236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 679 - 776
Target Start/End: Original strand, 12267316 - 12267413
Alignment:
Q  679 tttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatca 776  Q
    |||||| ||| | ||| ||||| ||||||  ||| |||||| |||||||| |||||||| |||||||||||||||||  |||| ||| ||||||||||    
T  12267316 tttgattgtcagaatatggagacatgatattatatattaattatatcctgtttaaattttatgtttgatgcaccaaacagatatgatgaaataaatca 12267413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1027 - 1063
Target Start/End: Original strand, 9315123 - 9315159
Alignment:
Q  1027 gttatcatgtgcgcatcaaacacatgataggattaat 1063  Q
    |||||||||||||||||||||||||||||||||||||    
T  9315123 gttatcatgtgcgcatcaaacacatgataggattaat 9315159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 912 - 958
Target Start/End: Complemental strand, 391246 - 391200
Alignment:
Q  912 tttttaaaataatgatagcatgcattttctattataatcaataacat 958  Q
    ||||||||||||| |||||||| ||||||||||||||| ||||||||    
T  391246 tttttaaaataattatagcatgtattttctattataattaataacat 391200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 1027 - 1063
Target Start/End: Original strand, 12255428 - 12255464
Alignment:
Q  1027 gttatcatgtgcgcatcaaacacatgataggattaat 1063  Q
    ||||||||||||||||||||||||||||| |||||||    
T  12255428 gttatcatgtgcgcatcaaacacatgataagattaat 12255464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 133; Significance: 2e-68; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 133; E-Value: 2e-68
Query Start/End: Original strand, 677 - 958
Target Start/End: Complemental strand, 18503274 - 18502991
Alignment:
Q  677 cgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatca 776  Q
    ||||||||||||  ||||| |||||  |||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||    
T  18503274 cgtttgatggtcatgatagagagatcggatatgatacattaatcatatcctgcttaaatatcatgtttgatgcaccaaagagataggataaaataaacca 18503175  T
Q  777 tttctctatcttattttgactttcctttgtcatttatatcataagtataa--gctgagttataaattatccagatgagattagaatatcattccttattt 874  Q
    |||  ||||| |||  ||| |||| ||||| |||| |||| | ||||||   |||| |||| ||||||| | |||| |||||||| ||||||| |||||     
T  18503174 ttttcctatcctatcctgattttcatttgtaatttctatcttgagtatataggctgtgttagaaattatgctgatgggattagaagatcattctttatta 18503075  T
Q  875 attatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacat 958  Q
    |||||||||||||||||  |||||| |||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||    
T  18503074 attatcttgatattctgccatttttgaaatattgtcatttttaaaataatgatagcatgtattttctattataattaataacat 18502991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 678 - 959
Target Start/End: Complemental strand, 15673149 - 15672876
Alignment:
Q  678 gtttgatggtccggatagggagatatgatacgatacattaatcatat--cctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatc 775  Q
    |||||||||||  |||||||||  | |||| ||||||||||||||||  ||||||||||| |||||||||||||||||||| |||||||||||||||| |    
T  15673149 gtttgatggtcaagatagggaggcaggatatgatacattaatcatatatcctgcttaaatctcatgtttgatgcaccaaagagataggataaaataaacc 15673050  T
Q  776 atttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttattta 875  Q
    ||||  ||||| |||  |||||||||||||  ||||||||       ||| |||| |||| |||||||||   ||||||||||| |||||||||||||||    
T  15673049 attttcctatcatatcctgactttcctttgcaatttatat-------ataggctgggttagaaattatcc---tgagattagaagatcattccttattta 15672960  T
Q  876 ttatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacata 959  Q
    |||||||||||||||   ||||| ||||||||||  |||||||||||||||||||||| ||||||||||||||| |||||||||    
T  15672959 ttatcttgatattctaacattttgaaaatattgttatttttaaaataatgatagcatgtattttctattataattaataacata 15672876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 709 - 961
Target Start/End: Original strand, 34703033 - 34703288
Alignment:
Q  709 gatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatcttattttgactttcctttgtca 808  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||   ||| |||||||||||  ||||  ||||| |||  |||||||||||||| |    
T  34703033 gatacattaatcatatcctgcttaaatcacatgtttgatgcaccaaaagtatatgataaaataaactattttcctatcatatcctgactttcctttgtaa 34703132  T
Q  809 tttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttattatc-ttgatattctgttatttttaaaatatt 907  Q
    |||||||||| || ||| | || |||| ||| ||||| |||| |||||||| |||||||||||||||||||| ||||||||||  |||||| ||||||||    
T  34703133 tttatatcatgaggataggttgggttagaaactatcctgatgggattagaagatcattccttatttattatctttgatattctactattttgaaaatatt 34703232  T
Q  908 gtcgtttttaaaataatgatagc--atgcattttctattataatcaataacatacc 961  Q
    ||| |||||||||||||||||||  ||| ||||||||||||||| |||| ||||||    
T  34703233 gtcatttttaaaataatgatagcatatgtattttctattataattaatagcatacc 34703288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 9e-24
Query Start/End: Original strand, 730 - 831
Target Start/End: Original strand, 6110160 - 6110261
Alignment:
Q  730 ttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagct 829  Q
    |||||| |||||||||||||| ||||| |||| ||||||||||||||||| |||||| ||| || |||||||||||| ||||||||| | ||||||||||    
T  6110160 ttaaatctcatgtttgatgcatcaaagggataagataaaataaatcatttttctatcctatcttaactttcctttgtaatttatatcctgagtataagct 6110259  T
Q  830 ga 831  Q
    ||    
T  6110260 ga 6110261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 869 - 958
Target Start/End: Complemental strand, 34866447 - 34866358
Alignment:
Q  869 ttatttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacat 958  Q
    ||||||||||| |||||||||||  ||||||| ||||||||  |||||||||||||||| ||||| ||||||||||||||| ||||||||    
T  34866447 ttatttattatattgatattctgccatttttataatattgttatttttaaaataatgattgcatgtattttctattataattaataacat 34866358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 50 - 237
Target Start/End: Complemental strand, 25985461 - 25985271
Alignment:
Q  50 gcatagaatccttgagcttttccaacaatcttagaattcaactgtggtcctaaagttaaagggttgtcgatcatgcggactgaaccaaaggcagtgttag 149  Q
    |||||||||||||| ||||||||||| |  || ||| |||| || |||||||| ||||||||||| || ||||||   ||| ||||||| |||||| | |    
T  25985461 gcatagaatccttgtgcttttccaaccaatttggaactcaattgaggtcctaaggttaaagggttctcaatcatgttaactaaaccaaaagcagtggttg 25985362  T
Q  150 agttt---aatgatggtggaataactacgatagaagtagggttttttccactcactatgtcatgccaataaaatttgaaatgacttagctt 237  Q
    |||||   || | |||||||| || |   || |||| |||||| |||||||| ||||||||||||||||| ||||| ||||| ||||||||    
T  25985361 agtttttcaaaggtggtggaacaattggtattgaagaagggttgtttccactaactatgtcatgccaatagaattttaaatggcttagctt 25985271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 692 - 890
Target Start/End: Complemental strand, 3480908 - 3480709
Alignment:
Q  692 atagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggata-aaataaatcatttctctatcttat 790  Q
    |||| ||||||||||| |||| |||||||||||| ||| ||||| |||||||| ||||| || |||||||  ||| |||||||||||||  |||||||||    
T  3480908 atagagagatatgatatgatatattaatcatatcatgcataaatctcatgtttaatgcatcatagtgataatatagaaataaatcattttcctatcttat 3480809  T
Q  791 tttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttattatcttgatattct 890  Q
      ||| || || |||| |||| |||| | || |||| ||  |||| ||  ||||  ||||||||||| |  ||||||||||||||||||| | |||||||    
T  3480808 cgtgatttgccattgtaatttttatcttgagcataaactatgttagaatctatcttgatgagattagcaattcattccttatttattatcataatattct 3480709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 675 - 796
Target Start/End: Complemental strand, 32585946 - 32585825
Alignment:
Q  675 ttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaat 774  Q
    |||||||||||| |  |||||||||  |  ||| ||||||  |||||||||||| |||||| |||||||||||||| |||| ||||| ||||||||||||    
T  32585946 ttcgtttgatggccacgatagggaggcaaaatatgatacaagaatcatatcctgtttaaatctcatgtttgatgcaacaaaatgatatgataaaataaat 32585847  T
Q  775 catttctctatcttattttgac 796  Q
     ||||  |||||||||| ||||    
T  32585846 aattttcctatcttattctgac 32585825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 677 - 779
Target Start/End: Original strand, 25102600 - 25102707
Alignment:
Q  677 cgtttgatggtccggatagggaga-----tatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaata 771  Q
    |||||||||||| |||||||||||     ||||||| |||| ||| |||| || || ||||||| |||||||||||||||||||  ||||||||||||||    
T  25102600 cgtttgatggtcgggatagggagacatgatatgatatgatatatttatcacattctacttaaatctcatgtttgatgcaccaaatagataggataaaata 25102699  T
Q  772 aatcattt 779  Q
    ||| ||||    
T  25102700 aattattt 25102707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 702 - 928
Target Start/End: Original strand, 28428933 - 28429160
Alignment:
Q  702 atgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatcttattttgactttcc 801  Q
    |||||| |||| ||| |||| ||| || |||||| | |||||| |||||||||||  |||||||||||||||| ||||    |||||||  | ||||  |    
T  28428933 atgatatgataaatttatcacatcatgtttaaatcttatgtttaatgcaccaaagaaataggataaaataaattattttgtaatcttatcctaacttatc 28429032  T
Q  802 tttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttattatcttgatattctgttatttttaa 901  Q
    ||||| ||||||||  ||| |||| | |  |||  |||||||||  ||  ||||| ||  |||||||||| |||||||| ||||||||||  ||||||||    
T  28429033 tttgtaatttatattttaaatatatgttaggtttgaaattatcctaataggattataaattcattccttagttattatcatgatattctgccatttttaa 28429132  T
Q  902 aata-ttgtcgtttttaaaataatgata 928  Q
    |||| || || |||||||||||||||||    
T  28429133 aatatttctcatttttaaaataatgata 28429160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 671 - 773
Target Start/End: Complemental strand, 24429450 - 24429348
Alignment:
Q  671 agggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaat 770  Q
    |||||| ||||||||||| |||||| ||| || |||| || | ||  ||||||||||| ||||||  |||||||||||||| |||| |||||||||||||    
T  24429450 agggtttgtttgatggtcaggatagagagttaagatatgacatatctatcatatcctgtttaaatcacatgtttgatgcactaaagggataggataaaat 24429351  T
Q  771 aaa 773  Q
    |||    
T  24429350 aaa 24429348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 861 - 905
Target Start/End: Original strand, 6110261 - 6110305
Alignment:
Q  861 atcattccttatttattatcttgatattctgttatttttaaaata 905  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  6110261 atcattccttatttattatcttgatattctgtcatttttaaaata 6110305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 856 - 922
Target Start/End: Complemental strand, 17508733 - 17508667
Alignment:
Q  856 agaatatcattccttatttattatcttgatattctgttatttttaaaatattgtcgtttttaaaata 922  Q
    |||| |||||||||||||||||||| |||| |||||  ||||||||||| ||||| |||||| ||||    
T  17508733 agaagatcattccttatttattatcatgatgttctgccatttttaaaatgttgtcatttttataata 17508667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 856 - 922
Target Start/End: Original strand, 17544481 - 17544547
Alignment:
Q  856 agaatatcattccttatttattatcttgatattctgttatttttaaaatattgtcgtttttaaaata 922  Q
    |||| |||||||||||||||||||| |||| |||||  ||||||||||| ||||| |||||| ||||    
T  17544481 agaagatcattccttatttattatcatgatgttctgccatttttaaaatgttgtcatttttataata 17544547  T

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Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 697 - 786
Target Start/End: Complemental strand, 15524351 - 15524263
Alignment:
Q  697 gagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatc 786  Q
    |||||| |||| |||| |||||||||||| |  |||||| ||||||||| ||||||| ||||| ||||| ||||||| ||||| ||||||    
T  15524351 gagataagatatgatatattaatcatatcttatttaaatctcatgtttggtgcaccagagtgagaggat-aaataaaccatttttctatc 15524263  T

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Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 852 - 909
Target Start/End: Complemental strand, 31804816 - 31804759
Alignment:
Q  852 gattagaatatcattccttatttattatcttgatattctgttatttttaaaatattgt 909  Q
    ||||||||  ||||||||||||||||||| ||||||| ||| ||||||||||| ||||    
T  31804816 gattagaaattcattccttatttattatcctgatattatgtcatttttaaaatgttgt 31804759  T

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Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 1027 - 1063
Target Start/End: Complemental strand, 34866289 - 34866253
Alignment:
Q  1027 gttatcatgtgcgcatcaaacacatgataggattaat 1063  Q
    ||||||||||||||||||||||||||||| |||||||    
T  34866289 gttatcatgtgcgcatcaaacacatgataagattaat 34866253  T

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Target: scaffold0702 (Bit Score: 49; Significance: 2e-18; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 718 - 910
Target Start/End: Complemental strand, 4127 - 3936
Alignment:
Q  718 atcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatcttattttgactttcctttgtcatttatatca 817  Q
    ||||||||| |||||||| |||||||||||||||||||| | | ||||||||||||  ||||  |||||||||  | ||||  |||||| |||| ||||     
T  4127 atcatatccggcttaaatatcatgtttgatgcaccaaagaggt-ggataaaataaactatttacctatcttatcctaacttatctttgtaatttttatct 4029  T
Q  818 taagtataagctgagttataaattatccagatgagattagaatatcattccttatttattatcttgatattctgttatttttaaaatattgtc 910  Q
    |||||||||| ||||||  ||| ||||  |||  ||||| ||  ||||||||| ||||||| | ||||||| | |  ||||||||||||||||    
T  4028 taagtataagatgagttggaaactatcatgataggattacaaattcattccttctttattaccatgatattatatcgtttttaaaatattgtc 3936  T

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Target: scaffold0662 (Bit Score: 49; Significance: 2e-18; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 718 - 910
Target Start/End: Original strand, 3975 - 4166
Alignment:
Q  718 atcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatcttattttgactttcctttgtcatttatatca 817  Q
    ||||||||| |||||||| |||||||||||||||||||| | | ||||||||||||  ||||  |||||||||  | ||||  |||||| |||| ||||     
T  3975 atcatatccggcttaaatatcatgtttgatgcaccaaagaggt-ggataaaataaactatttacctatcttatcctaacttatctttgtaatttttatct 4073  T
Q  818 taagtataagctgagttataaattatccagatgagattagaatatcattccttatttattatcttgatattctgttatttttaaaatattgtc 910  Q
    |||||||||| ||||||  ||| ||||  |||  ||||| ||  ||||||||| ||||||| | ||||||| | |  ||||||||||||||||    
T  4074 taagtataagatgagttggaaactatcatgataggattacaaattcattccttctttattaccatgatattatatcgtttttaaaatattgtc 4166  T

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Target: scaffold0817 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0817
Description:

Target: scaffold0817; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 677 - 738
Target Start/End: Complemental strand, 62 - 1
Alignment:
Q  677 cgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttc 738  Q
    |||||||||| | ||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  62 cgtttgatggccaggatagggagacatgatatgatacattaatcatattctgcttaaatttc 1  T

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Target: scaffold0957 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0957
Description:

Target: scaffold0957; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 714 - 790
Target Start/End: Original strand, 1659 - 1735
Alignment:
Q  714 attaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatcttat 790  Q
    |||||||||||| |  |||||| | ||||||| |||||||||| |||||||| ||||||||||||| ||||||||||    
T  1659 attaatcatatcttatttaaatcttatgtttggtgcaccaaagagataggatgaaataaatcatttttctatcttat 1735  T

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Target: scaffold0957; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 869 - 924
Target Start/End: Original strand, 1816 - 1871
Alignment:
Q  869 ttatttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataat 924  Q
    ||||||||| || ||||||||| | ||||||||||| ||||| |||||||||||||    
T  1816 ttatttattttcatgatattctatcatttttaaaattttgtcatttttaaaataat 1871  T

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