View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8603_low_20 (Length: 247)

Name: NF8603_low_20
Description: NF8603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8603_low_20
NF8603_low_20
[»] chr8 (3 HSPs)
chr8 (18-247)||(31506796-31507017)
chr8 (26-123)||(31499693-31499790)
chr8 (199-245)||(31499828-31499874)


Alignment Details
Target: chr8 (Bit Score: 156; Significance: 5e-83; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 31506796 - 31507017
Alignment:
Q  18 atcaattaataaagaccggcacagtttggactaattggaaattgttagccacttgctgcatattaaaatataatatgttgctttcaaaatactcttgtgg 117  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |    
T  31506796 atcaattaataaaggccggcacagtttggactaattagaaattgttagccacttgcagcatattaaaatataatctgttgctttcaaaatactcttgtag 31506895  T
Q  118 aataaaatgtgtaatattaagtctttggttaggaattgatttaattcattcattcaca----cacgagatcagatatgtgtgtaagatctttcgaaagat 213  Q
    ||||            ||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||    
T  31506896 aata------------ttaagtctttggttaggaattgatttaattcattcattcacacacacacgagatcagatatgtgtgtaagatctttcgaaagat 31506983  T
Q  214 accaacccttgtcttgtaataaggacaaccatac 247  Q
    ||||||||||||||||||||||||||||||||||    
T  31506984 accaacccttgtcttgtaataaggacaaccatac 31507017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 26 - 123
Target Start/End: Original strand, 31499693 - 31499790
Alignment:
Q  26 ataaagaccggcacagtttggactaattggaaattgttagccacttgctgcatattaaaatataatatgttgctttcaaaatactcttgtggaataaa 123  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||| || |||||||||    
T  31499693 ataaaggccggcacagtttggactaattggaaattgttagccacttgcagcatattaaaatataatctgttgctttaaaaatacttttatggaataaa 31499790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 199 - 245
Target Start/End: Original strand, 31499828 - 31499874
Alignment:
Q  199 gatctttcgaaagataccaacccttgtcttgtaataaggacaaccat 245  Q
    |||||||||||||| ||||| ||||||||||||||||| ||||||||    
T  31499828 gatctttcgaaagagaccaatccttgtcttgtaataagaacaaccat 31499874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University