View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8603_low_22 (Length: 239)
Name: NF8603_low_22
Description: NF8603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8603_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 31507014 - 31507241
Alignment:
| Q |
1 |
atacaaagaatatcgta----gaaaatgttataatacttttaatttggcgggttgtaatccttaaaaagaacacaacatttgtcacaatgtgccatagaa |
96 |
Q |
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| T |
31507014 |
atacaaagaatatcgtataaagaaaatgttataatacttttaatttggcgggttgtaatccttaaaaggaacacaacatttgtcacaatgtgccatagaa |
31507113 |
T |
|
| Q |
97 |
aatcatttattttagtagtacatca-nnnnnnnaatatgaaaaagagcagtaattaactgcatcgagtcatgatcgatattcaataatcgtaacattcaa |
195 |
Q |
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| T |
31507114 |
aataatttattttagtagtacatcattttttttaatatgaaaaggagcagtaattaactgtatcgagtcatgatcgatattccataatcgtaacattcaa |
31507213 |
T |
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| Q |
196 |
tcccatataactcatccaaggtacattt |
223 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
31507214 |
tcccatataactcatccaaggtacattt |
31507241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 210
Target Start/End: Original strand, 33061914 - 33061977
Alignment:
| Q |
147 |
aattaactgcatcgagtcatgatcgatattcaataatcgtaacattcaatcccatataactcat |
210 |
Q |
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||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||| ||||| |
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| T |
33061914 |
aattaactgtatcgagtcatgatcgatatttcgtaatcgtaacaatcaatcccatatacctcat |
33061977 |
T |
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