View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8603_low_24 (Length: 211)
Name: NF8603_low_24
Description: NF8603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8603_low_24 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 13 - 192
Target Start/End: Complemental strand, 18142459 - 18142280
Alignment:
| Q |
13 |
gaagcagaggacaaaataaggggtactttattacttagtctggcttttatggaagctttaactatttatgggctggttgtagcattagcacttttatttg |
112 |
Q |
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| T |
18142459 |
gaagcagaggacaaaataaggggtactttattacttagtctggcttttatggaagctttaactatttatgggctggttgtagcattagcacttttatttg |
18142360 |
T |
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| Q |
113 |
ccaatccttttgtttaatcttttaaacaaatagaaaaagaaaaatacatattgttttttccgtggactttcattgctgct |
192 |
Q |
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| T |
18142359 |
ccaatccttttgtttaatcttttaaacaaatagaaaaagaaaaatacatattgttttttccgtggactttcattgctgct |
18142280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 123; Significance: 2e-63; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 66 - 192
Target Start/End: Complemental strand, 41394367 - 41394241
Alignment:
| Q |
66 |
agctttaactatttatgggctggttgtagcattagcacttttatttgccaatccttttgtttaatcttttaaacaaatagaaaaagaaaaatacatattg |
165 |
Q |
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| T |
41394367 |
agctttaactatttatggactggttgtagcattagcacttttatttgccaatccttttgtttaatcttttaaacaaatagaaaaagaaaaatacatattg |
41394268 |
T |
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| Q |
166 |
ttttttccgtggactttcattgctgct |
192 |
Q |
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| T |
41394267 |
ttttttccgtggactttcattgctgct |
41394241 |
T |
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Target: chr3 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 108 - 174
Target Start/End: Original strand, 16059981 - 16060047
Alignment:
| Q |
108 |
atttgccaatccttttgtttaatcttttaaacaaatagaaaaagaaaaatacatattgttttttccg |
174 |
Q |
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| T |
16059981 |
atttgccaatccttttgtttaatcttttaaacaaatagaaaaagaaaaatacatattgttttttccg |
16060047 |
T |
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Target: scaffold0002 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 232481 - 232600
Alignment:
| Q |
12 |
agaagcagaggacaaaataaggggtactttattacttagtctggcttttatggaagctttaactatttatgggctggttgtagcattagcacttttattt |
111 |
Q |
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||||||||| | |||||| | ||||||||||| |||||||| |||||||||||||||||||| |||||||| || ||||| ||| |||| ||||||||| |
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| T |
232481 |
agaagcagaaggtaaaatacgaggtactttattgcttagtctagcttttatggaagctttaacaatttatggactagttgtggcactagcgcttttattt |
232580 |
T |
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| Q |
112 |
gccaatccttttgtttaatc |
131 |
Q |
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| T |
232581 |
gcgaacccttttgtttaatc |
232600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 183
Target Start/End: Complemental strand, 18035269 - 18035199
Alignment:
| Q |
114 |
caatccttttgtttaatcttttaaacaaatagaa-aaagaaaaatacatattgttttttccgtggactttc |
183 |
Q |
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| T |
18035269 |
caatccttttgtttaatcttttaaaaaaaaaaaagaaaaaaagttacatattattttttctgtggactttc |
18035199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 192
Target Start/End: Complemental strand, 18040685 - 18040594
Alignment:
| Q |
103 |
cttttatttgccaatccttttg----tttaatcttttaaacaaatagaaaaagaaaaatacatattgttttttccgtggactttcattgctgct |
192 |
Q |
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|||||||||| ||||||||||| |||||||||| ||| ||||||||| | ||| ||||||||||||||| |||||||||| |||||||| |
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| T |
18040685 |
cttttatttgtcaatccttttgcttatttaatctttaaaa-aaatagaaagaaaaagttacatattgtttttt-tgtggactttcgttgctgct |
18040594 |
T |
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