View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8603_low_6 (Length: 459)
Name: NF8603_low_6
Description: NF8603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8603_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 52 - 441
Target Start/End: Original strand, 11173314 - 11173703
Alignment:
| Q |
52 |
tagaaattttcgtatactatcttttattaaatagaaatagcttaaacataagcatgttacctgaatttgatacgtctaagctcgttgttcccatcaggat |
151 |
Q |
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| T |
11173314 |
tagaaattttcgtatactatcttttattatatagaaatagcttaaacataagcatgttacctgaatttgatacgtctaagctcgttgttcccatcaggat |
11173413 |
T |
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| Q |
152 |
actgcctgactgtgacaaatattccaggctcaacttgctcaatccattctgagtcagggtcactagagttgctgaaggaaatttcattcattgaagaaga |
251 |
Q |
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| T |
11173414 |
actgcctgactgtgacaaatattccaggctcaacttgctcaatccattctgagtcagggtcactagaattgctgaaggaaatttcattcatagaagaaga |
11173513 |
T |
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| Q |
252 |
ccttaatgctgcatgcatgttttggttgctactgcttccctcacccatagtgaatcctgaaggattaaagtactgattccccaccattggatcattgttt |
351 |
Q |
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| T |
11173514 |
ccttaatgctgcatgcatgttttggttgctactgcttccctcacccatagtgaatcctgaaggattaaagtactgattccccaccattggatcattgttt |
11173613 |
T |
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| Q |
352 |
tcccaagcagccacattgcttccacttccagtttcatgcattgagtaagaagcttctctttgctgttcaaaggaaacaatctaataatta |
441 |
Q |
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| T |
11173614 |
tcccaagcagccacattgcttccacttccagtttcatgcattgagtaagaagcttctctttgcttttcaaaggaaacaatgtaataatta |
11173703 |
T |
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