View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8603_low_7 (Length: 426)
Name: NF8603_low_7
Description: NF8603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8603_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 24 - 414
Target Start/End: Complemental strand, 51106555 - 51106165
Alignment:
| Q |
24 |
cctgatgctacaggttactacgcgcttcagtgggctgcactcaacaaccagacttctgttgctaagtacatcattcatcatggtggagatataaatgcaa |
123 |
Q |
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| T |
51106555 |
cctgatgctacgggttactacgcgcttcagtgggctgcactcaacaaccaaacttctgttgctaagtacatcattgatcatggtggagatataaatgcaa |
51106456 |
T |
|
| Q |
124 |
aagatcgtagtggccagacagcattgcattggagtgctgtacggggttctgttgaggttgcagaccttttactcaaagagggtgctcaattgaattctgc |
223 |
Q |
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|||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51106455 |
aagatcgtagtggctagacagcattgcattggagtgccgtacggggttctgttgaggttgcagaccttttactcaaagagggtgctcaattgaattctgc |
51106356 |
T |
|
| Q |
224 |
tgacaaggatgggtatcagacaatacatgttgctgctcaatatgatcaaacatctttcctttaccacattgtttcaaaatggaatgctgaccctgacgtt |
323 |
Q |
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| T |
51106355 |
tgacaaggatgggtatcagacaatacatgttgctgctcaatatgatcaaacatctttcctttaccacattgtttcaaaatggaatgctgaccctgacgtt |
51106256 |
T |
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| Q |
324 |
cttgataatgatggaagaagcccattgcattgggctgcttgcaaaggtttttctgatttaattcgtcttctgttatttcttgatgtccatc |
414 |
Q |
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| T |
51106255 |
cttgataatgatggaagaagcccattgcattgggctgcttgcaaaggtttttctgatttaattcgtcttctgttatttcttgatgtacatc |
51106165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 36 - 407
Target Start/End: Complemental strand, 51115879 - 51115508
Alignment:
| Q |
36 |
ggttactacgcgcttcagtgggctgcactcaacaaccagacttctgttgctaagtacatcattcatcatggtggagatataaatgcaaaagatcgtagtg |
135 |
Q |
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| T |
51115879 |
ggttattacgtgattcagtgggctgcactcaacaaccatactgctgttgctcagtacatcatcgatcatggtggagatataaacgcaacagatcgtaatg |
51115780 |
T |
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| Q |
136 |
gccagacagcattgcattggagtgctgtacggggttctgttgaggttgcagaccttttactcaaagagggtgctcaattgaattctgctgacaaggatgg |
235 |
Q |
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|||| || ||||||||||||||||| || || |||| | ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
51115779 |
gccaaacggcattgcattggagtgcggttcgaggttgtattgaggttgcagagcttttactcaaagagggtgctgaattgaattctgctgacaagtatgg |
51115680 |
T |
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| Q |
236 |
gtatcagacaatacatgttgctgctcaatatgatcaaacatctttcctttaccacattgtttcaaaatggaatgctgaccctgacgttcttgataatgat |
335 |
Q |
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| T |
51115679 |
gtatcagacaacacatgttgcagctcaatatggtcatacagctttcctttaccatcttgtttcaaaatggaacgctgagcctgatgttcctgataatgaa |
51115580 |
T |
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| Q |
336 |
ggaagaagcccattgcattgggctgcttgcaaaggtttttctgatttaattcgtcttctgttatttcttgat |
407 |
Q |
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| T |
51115579 |
ggaagaagccccttgcattgggctgcttacaaaggttttgctgattttatatgtcttctgttatttcttgat |
51115508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 102 - 242
Target Start/End: Original strand, 48033760 - 48033900
Alignment:
| Q |
102 |
catggtggagatataaatgcaaaagatcgtagtggccagacagcattgcattggagtgctgtacggggttctgttgaggttgcagaccttttactcaaag |
201 |
Q |
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|||||||||||| ||||||||| ||||| | ||||||||||||||||||||||||||| || |||||| || || |||||||||| || |||||| ||| |
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| T |
48033760 |
catggtggagatgtaaatgcaacagatcattctggccagacagcattgcattggagtgcggttcggggtgctattcaggttgcagagctattactccaag |
48033859 |
T |
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| Q |
202 |
agggtgctcaattgaattctgctgacaaggatgggtatcag |
242 |
Q |
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| T |
48033860 |
agggtgctcgagtgaacgctgctgacatgaatgggtatcag |
48033900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 248 - 356
Target Start/End: Original strand, 48034113 - 48034221
Alignment:
| Q |
248 |
acatgttgctgctcaatatgatcaaacatctttcctttaccacattgtttcaaaatggaatgctgaccctgacgttcttgataatgatggaagaagccca |
347 |
Q |
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|||||||||||||||||||| ||| || ||||||||||| | || ||||||||||||||||||||||||| | || |||||| ||||||||| |||| |
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| T |
48034113 |
acatgttgctgctcaatatggtcagacggctttcctttactatgttatttcaaaatggaatgctgaccctgatgctcctgataaagatggaagatgcccc |
48034212 |
T |
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| Q |
348 |
ttgcattgg |
356 |
Q |
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||||||||| |
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| T |
48034213 |
ttgcattgg |
48034221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 355 - 408
Target Start/End: Original strand, 48035932 - 48035985
Alignment:
| Q |
355 |
gggctgcttgcaaaggtttttctgatttaattcgtcttctgttatttcttgatg |
408 |
Q |
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||||||||| |||||||||| |||||| || |||||||||||||||||||||| |
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| T |
48035932 |
gggctgcttacaaaggttttgctgattgtatacgtcttctgttatttcttgatg |
48035985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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