View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8603_low_9 (Length: 372)
Name: NF8603_low_9
Description: NF8603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8603_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 67 - 356
Target Start/End: Original strand, 8518832 - 8519120
Alignment:
| Q |
67 |
acttggtatacaatgatgaatactaattccatgcacaatcacatgactaacatgttggattgtaatacatggtccatttgcaatttcaaccttaacacct |
166 |
Q |
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| T |
8518832 |
acttggtttacaataatgaatcataattccatgcacaatcacatgactaacattatgtattgtaatacaaggtccatttgcaatttcaaccttaaaacct |
8518931 |
T |
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| Q |
167 |
ctaccatcaattgtcttgtaactatttacaataagctcgttttccagcttaattgacatgtcttttgcaaatgttatccaaagtggctttgtttgaatta |
266 |
Q |
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| T |
8518932 |
ctaccatcaattgtcttgtaactattcaacataagctcgtttttcagcttaattaccatgtcttttgcaaatgttatccaaagtggctttgtttgaatta |
8519031 |
T |
|
| Q |
267 |
caccataacgaagtgtaccttgtttagggtttatcgggtcatctgaagggttagtgacttcatatatttcaccaaactttcctccagttg |
356 |
Q |
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| T |
8519032 |
caccataacgaagtgtaccttgtttagggtttatcgggtcatctgaagggttagtgacttcatat-tttcaccaaactttcctccagttg |
8519120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 67 - 352
Target Start/End: Original strand, 8526923 - 8527208
Alignment:
| Q |
67 |
acttggtatacaatgatgaatactaattccatgcacaatcacatgactaacatgttggattgtaatacatggtccatttgcaatttcaaccttaacacct |
166 |
Q |
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||||||| |||||| |||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||| ||| ||||| |
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| T |
8526923 |
acttggtttacaatcatgaatactaataccatgcacaatcacatgactaacaccctgtattgtaatacatggtccatttccaatttcaactttagcacct |
8527022 |
T |
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| Q |
167 |
ctaccatcaattgtcttgtaactatttacaataagctcgttttccagcttaattgacatgtcttttgcaaatgttatccaaagtggctttgtttgaatta |
266 |
Q |
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|||||||||||||| ||||||||||| |||||||| || |||| || |||||| |||||| |||| |||| ||||||||| ||| | || |||||||| |
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| T |
8527023 |
ctaccatcaattgttttgtaactattcacaataagttcatttttcaatttaattaccatgtcatttgaaaatattatccaaactggttctgcttgaatta |
8527122 |
T |
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| Q |
267 |
caccataacgaagtgtaccttgtttagggtttatcgggtcatctgaagggttagtgacttcatatatttcaccaaactttcctcca |
352 |
Q |
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| T |
8527123 |
caccataacgaagtgtacctttttttgggtttatagggtcatcagaagggtcagtgacttcatatatctcaccatattttcctcca |
8527208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 67 - 201
Target Start/End: Original strand, 55373807 - 55373941
Alignment:
| Q |
67 |
acttggtatacaatgatgaatactaattccatgcacaatcacatgactaacatgttggattgtaatacatggtccatttgcaatttcaaccttaacacct |
166 |
Q |
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||||||| |||||| |||||| ||||||||||| | ||| |||||||||||| ||| ||||||||||| ||||||||| |||| ||||| ||||| ||| |
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| T |
55373807 |
acttggtttacaatcatgaatgctaattccatgtataataacatgactaacaccttgtattgtaatacaaggtccatttccaatctcaactttaactcct |
55373906 |
T |
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| Q |
167 |
ctaccatcaattgtcttgtaactatttacaataag |
201 |
Q |
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||||||||||| |||||||||||||| | |||||| |
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| T |
55373907 |
ctaccatcaatagtcttgtaactattcataataag |
55373941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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