View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8604_high_1 (Length: 494)
Name: NF8604_high_1
Description: NF8604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8604_high_1 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 5e-88; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 255 - 494
Target Start/End: Complemental strand, 8521590 - 8521346
Alignment:
| Q |
255 |
gtaacaatatgaagtggaagaaattgtgagatgaaaaatcaaaccaatcagctagggaaaaattagaccaatcaatatgagctagggnnnnnnnn-ctca |
353 |
Q |
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| T |
8521590 |
gtaacaatatgaagtggaagaaattgtgagataaaaaatcaaaccaatcagctagggaaaaattagaccaatcaat--gagctagggaaaaaaaaactca |
8521493 |
T |
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| Q |
354 |
taaaaattta------taagcctcataaaataagtaaagatatgatgtggaagaatttgtgagatgaaatatcaaaccactcagctagaaaaaataacaa |
447 |
Q |
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| T |
8521492 |
taaaaatttaaatttataagcctcataaaataagtaaagatatgatgtggaagaatttgtgagatgaaatatcaaaccactcagctagaaaaaataacaa |
8521393 |
T |
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| Q |
448 |
accaatcaatgctcctataatatgataacaatgactttgaagtcaat |
494 |
Q |
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| T |
8521392 |
accaatcgatgctcctataatacgataacaatgactttaaagtcaat |
8521346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 8521824 - 8521625
Alignment:
| Q |
18 |
cataactatgcagagcagatgccaatgtggtctaatgatataattttttgatgtgatgaaattaagtttattttt--cagtgtatcaagaggagaaacga |
115 |
Q |
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| T |
8521824 |
cataattatgcagagcagatgccaatgtggtgtaatgatataattttttgatatgatgaaattaagtttatttttcacagtgtatcaggaggagaaacga |
8521725 |
T |
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| Q |
116 |
aaggaacacacttaattaatttctctgatactaaattgcataannnnnnnnnagggattaaattaagttttacgattattttgagagattaaaattggac |
215 |
Q |
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| T |
8521724 |
aaggaacacac----ttaatttctctgatactaaattgcataa-ttttttttagggattaaattaagttttacgattattttgagagattaaaattggac |
8521630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 372 - 494
Target Start/End: Complemental strand, 8511879 - 8511758
Alignment:
| Q |
372 |
ataaaataagtaaagatatgatgtggaagaatttgtgagatgaaatatcaaaccactcagctagaaaaaataacaaaccaatcaatgctcctataatatg |
471 |
Q |
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| T |
8511879 |
ataaaataagtatagatatgatgtgaaa-aatttgtgagatgaaaaataaaaccaatcaggtagtaaaaataggaaatcaatcaatgctcctataatacg |
8511781 |
T |
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| Q |
472 |
ataacaatgactttgaagtcaat |
494 |
Q |
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| T |
8511780 |
ataacaatgactttcaagtcaat |
8511758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 8518727 - 8518670
Alignment:
| Q |
253 |
aagtaacaatatgaagtggaagaaattgtgagatgaaaaatcaaaccaatcagctagg |
310 |
Q |
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| T |
8518727 |
aagtaacaatatgaaggggaagaaattgtgagatgataaatcaaaccaatcagttagg |
8518670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 253 - 315
Target Start/End: Complemental strand, 8530231 - 8530169
Alignment:
| Q |
253 |
aagtaacaatatgaagtggaagaaattgtgagatgaaaaatcaaaccaatcagctagggaaaa |
315 |
Q |
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| T |
8530231 |
aagtaactatacgaaggggaagaaattgtgagatgaaaaataaaaccaatcagttaggaaaaa |
8530169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 410 - 492
Target Start/End: Complemental strand, 12251163 - 12251083
Alignment:
| Q |
410 |
gatgaaatatcaaaccactcagctagaaaaaataacaaaccaatcaatgctcctataatatgataacaatgactttgaagtca |
492 |
Q |
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| T |
12251163 |
gatgaaaaatcaaactaattagctaggaaaaa-atcaaaccaatcaatgctc-tataatacgataacaatgattttaaagtca |
12251083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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