View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8604_high_3 (Length: 395)
Name: NF8604_high_3
Description: NF8604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8604_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 20 - 389
Target Start/End: Original strand, 36494949 - 36495317
Alignment:
| Q |
20 |
caaacggggccaaagcctcctaaacctatttcgctccaaaatcctttctcaattgcattcccaaaacctctcacacacaatgggaatgctgctatcttta |
119 |
Q |
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| T |
36494949 |
caaacgggcccaaaacctcctaaacctatttcgctccaaaatcgtttctcaattgcattcccaaaacctctcacacacaatgggaatgctgctatcttta |
36495048 |
T |
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| Q |
120 |
gcagaagaaggttggttcgtaatcccatttttcttcatcttccttttaccttatcggttacttcatctcttccaagaccgaactcctcaggttcgagtca |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
36495049 |
gcagaagaaggttggttcgtaatcccatttttcttcatcttccttttaccttatcggttacttcatctcttccaagaccgaactcctcaagttcgagtca |
36495148 |
T |
|
| Q |
220 |
catactccagcatcttgatttgcgtctttcacggcttagccgacaccaaccgtggcttatcagccgccaataataccttgcagaacatcgttcttgactt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36495149 |
catactccagcatcttgatttgcgtctttcacggcttagccgacaccaaccgtggcttatcagccgccaataataccttgcagaacatcgttcttgactt |
36495248 |
T |
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| Q |
320 |
cagcatcccctacttcatcgccgatctgttacatttcgtcgttttcctcccaagctacgttctctgcttc |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
36495249 |
cagcatcccctacttcatcgccgatctgttacatttcgtcattttcctcccaagctacg-tctctgcttc |
36495317 |
T |
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