View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8604_high_5 (Length: 344)
Name: NF8604_high_5
Description: NF8604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8604_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 41 - 151
Target Start/End: Complemental strand, 93966 - 93856
Alignment:
| Q |
41 |
ttggagatggacaaccaactcctgcatctcatccaataacacgtttctacttttctatttctcaatagcgtaaaagaacatcatttcttaatgtgaaaca |
140 |
Q |
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| T |
93966 |
ttggacatggacaaccaactcctgcatctcatccaataacacgtttctacttttctatttctcaatagcgtaaaagaacatcatttcttaatgtgaaaca |
93867 |
T |
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| Q |
141 |
agccttctttg |
151 |
Q |
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| T |
93866 |
agccttctttg |
93856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 257 - 333
Target Start/End: Complemental strand, 91376 - 91300
Alignment:
| Q |
257 |
cctcgagaacacaacaacctggtaaaatatatttcgtcttagagaaatttgtgacctgaataagcttcatattcaac |
333 |
Q |
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| T |
91376 |
cctcgagaacacaacaacctggtaaaatatatttcgtcttagagaaatttgtgacctggataagcttcatattcaac |
91300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 168 - 234
Target Start/End: Complemental strand, 93087 - 93021
Alignment:
| Q |
168 |
aagtgtcacaattctcccatttggtctcctcagtcaggtggagttaactgaatggtctaacttcgtc |
234 |
Q |
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| T |
93087 |
aagtgtcacaattctcccatttggtatcctcagtcaggtggggttaagtgaatgatctaacttcgtc |
93021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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