View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8604_high_7 (Length: 262)
Name: NF8604_high_7
Description: NF8604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8604_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 167 - 244
Target Start/End: Complemental strand, 1704420 - 1704343
Alignment:
| Q |
167 |
cttcttcttcttcttatatctatatatacacatagacacacacaatgcacctatctctccaactacatgtgagttgag |
244 |
Q |
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| T |
1704420 |
cttcttcttcttcttatgtctatatatacacatagacacacacaatgcacctatctctccaactacatgtgagttgag |
1704343 |
T |
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Target: chr3; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 32 - 109
Target Start/End: Complemental strand, 1704560 - 1704481
Alignment:
| Q |
32 |
aatttataatgaatgttagtagagtagtcgaacatagacatcaccttatctcttatatcactcc--ctccaaatgaccta |
109 |
Q |
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| T |
1704560 |
aatttataatgaatgttagtagagtagtcgaacatagacatcaccttatctcttatatcactccctctccaaatgaccta |
1704481 |
T |
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