View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8604_low_1 (Length: 965)

Name: NF8604_low_1
Description: NF8604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8604_low_1
NF8604_low_1
[»] chr4 (21 HSPs)
chr4 (22-652)||(3767355-3767986)
chr4 (719-898)||(3768052-3768232)
chr4 (393-631)||(34513686-34513924)
chr4 (361-652)||(45499086-45499379)
chr4 (429-649)||(37910578-37910797)
chr4 (368-649)||(28115840-28116121)
chr4 (370-649)||(34940259-34940538)
chr4 (454-640)||(5787224-5787410)
chr4 (485-640)||(44290091-44290246)
chr4 (491-649)||(34513934-34514091)
chr4 (409-639)||(17702135-17702365)
chr4 (369-456)||(21342155-21342242)
chr4 (22-84)||(3781339-3781398)
chr4 (915-957)||(3768259-3768301)
chr4 (553-619)||(11138750-11138816)
chr4 (368-440)||(37911176-37911248)
chr4 (381-457)||(53923655-53923731)
chr4 (421-464)||(11138663-11138706)
chr4 (547-598)||(53923864-53923915)
chr4 (718-752)||(5787115-5787149)
chr4 (721-754)||(34940610-34940643)
[»] chr1 (14 HSPs)
chr1 (368-649)||(28622827-28623108)
chr1 (361-623)||(49549473-49549734)
chr1 (362-601)||(37346974-37347213)
chr1 (368-636)||(19909968-19910236)
chr1 (369-596)||(10306758-10306987)
chr1 (395-464)||(48527377-48527446)
chr1 (409-470)||(52267631-52267692)
chr1 (718-754)||(37346168-37346204)
chr1 (718-753)||(52268254-52268289)
chr1 (718-754)||(19910328-19910364)
chr1 (588-624)||(49549853-49549889)
chr1 (719-750)||(30952148-30952179)
chr1 (543-612)||(12856822-12856892)
chr1 (382-507)||(35508891-35509016)
[»] chr5 (19 HSPs)
chr5 (368-652)||(29860834-29861117)
chr5 (369-647)||(33007914-33008189)
chr5 (405-649)||(33134090-33134333)
chr5 (369-646)||(15922102-15922379)
chr5 (363-650)||(31077809-31078092)
chr5 (369-596)||(7883742-7883969)
chr5 (407-649)||(25346967-25347219)
chr5 (362-596)||(5868239-5868472)
chr5 (362-502)||(42683974-42684114)
chr5 (406-573)||(21092372-21092537)
chr5 (381-507)||(2498915-2499041)
chr5 (585-649)||(21091178-21091242)
chr5 (718-754)||(25346862-25346898)
chr5 (718-754)||(33134402-33134438)
chr5 (718-753)||(21091074-21091109)
chr5 (718-754)||(31078184-31078220)
chr5 (718-754)||(39351585-39351621)
chr5 (585-649)||(42683848-42683912)
chr5 (718-755)||(33007806-33007843)
[»] chr2 (14 HSPs)
chr2 (362-647)||(40619612-40619897)
chr2 (400-649)||(41595239-41595488)
chr2 (361-645)||(13996071-13996355)
chr2 (381-649)||(27338700-27338958)
chr2 (362-635)||(13349429-13349702)
chr2 (485-650)||(19695769-19695932)
chr2 (362-549)||(37485562-37485746)
chr2 (362-476)||(19695466-19695580)
chr2 (586-649)||(37485757-37485820)
chr2 (719-754)||(13995549-13995584)
chr2 (484-579)||(34355880-34355975)
chr2 (718-754)||(27339027-27339063)
chr2 (544-619)||(15665342-15665417)
chr2 (718-756)||(40619503-40619541)
[»] chr8 (18 HSPs)
chr8 (369-649)||(43596799-43597079)
chr8 (368-651)||(37246131-37246412)
chr8 (369-652)||(16295305-16295586)
chr8 (369-652)||(16303007-16303288)
chr8 (362-567)||(32962016-32962221)
chr8 (368-649)||(15268592-15268873)
chr8 (418-646)||(27696248-27696473)
chr8 (436-649)||(40953263-40953476)
chr8 (456-640)||(11656270-11656454)
chr8 (362-596)||(16456456-16456690)
chr8 (400-464)||(11657003-11657067)
chr8 (405-534)||(8491048-8491176)
chr8 (361-424)||(42180461-42180524)
chr8 (401-446)||(511650-511695)
chr8 (718-754)||(3174233-3174269)
chr8 (718-754)||(40953545-40953581)
chr8 (719-750)||(23586059-23586090)
chr8 (532-579)||(35010687-35010734)
[»] chr3 (15 HSPs)
chr3 (360-649)||(28457698-28457982)
chr3 (361-649)||(40700941-40701228)
chr3 (387-596)||(21748362-21748571)
chr3 (362-568)||(33072584-33072790)
chr3 (368-516)||(7818464-7818611)
chr3 (368-594)||(45853075-45853299)
chr3 (369-495)||(21495053-21495178)
chr3 (562-640)||(4384957-4385035)
chr3 (550-596)||(21495222-21495268)
chr3 (361-457)||(46663163-46663259)
chr3 (412-452)||(27488469-27488509)
chr3 (718-754)||(40700836-40700872)
chr3 (367-470)||(41865803-41865906)
chr3 (718-751)||(28457596-28457629)
chr3 (718-754)||(54819668-54819705)
[»] chr6 (12 HSPs)
chr6 (365-652)||(23404450-23404736)
chr6 (400-646)||(9314806-9315051)
chr6 (361-630)||(12255070-12255339)
chr6 (369-649)||(10789337-10789618)
chr6 (362-649)||(29979314-29979597)
chr6 (368-652)||(32329317-32329590)
chr6 (419-619)||(24660738-24660938)
chr6 (543-596)||(391236-391289)
chr6 (370-467)||(12267316-12267413)
chr6 (718-754)||(9315123-9315159)
chr6 (603-649)||(391200-391246)
chr6 (718-754)||(12255428-12255464)
[»] chr7 (16 HSPs)
chr7 (368-649)||(18502991-18503274)
chr7 (369-650)||(15672876-15673149)
chr7 (400-652)||(34703033-34703288)
chr7 (421-522)||(6110160-6110261)
chr7 (560-649)||(34866358-34866447)
chr7 (383-581)||(3480709-3480908)
chr7 (366-487)||(32585825-32585946)
chr7 (368-470)||(25102600-25102707)
chr7 (393-619)||(28428933-28429160)
chr7 (362-464)||(24429348-24429450)
chr7 (552-596)||(6110261-6110305)
chr7 (547-613)||(17508667-17508733)
chr7 (547-613)||(17544481-17544547)
chr7 (388-477)||(15524263-15524351)
chr7 (543-600)||(31804759-31804816)
chr7 (718-754)||(34866253-34866289)
[»] scaffold0702 (1 HSPs)
scaffold0702 (409-601)||(3936-4127)
[»] scaffold0662 (1 HSPs)
scaffold0662 (409-601)||(3975-4166)
[»] scaffold0817 (1 HSPs)
scaffold0817 (368-429)||(1-62)
[»] scaffold0957 (2 HSPs)
scaffold0957 (405-481)||(1659-1735)
scaffold0957 (560-615)||(1816-1871)


Alignment Details
Target: chr4 (Bit Score: 587; Significance: 0; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 22 - 652
Target Start/End: Original strand, 3767355 - 3767986
Alignment:
Q  22 gttgcaagatatgagaaggaagaagaacaaagtgatgaggaaatgtttggaaggcattatggtggatgcaagagattgttgtgatgctaactgtggagac 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3767355 gttgcaagatatgagaaggaagaagaacaaagtgatgaggaaatgtttggaaggcattatggtggatgcaagagattgttgtgatgctaactgtggagac 3767454  T
Q  122 agtaaagtagtggaggactaggagagaagacaataatagtggaagcttaatgaagtgaagttaaagaaagtgaggaacaaaattataagaagaggaaagt 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3767455 agtaaagtagtggaggactaggagagaagacaataatagtggaagcttaatgaagtgaagttaaagaaagtgaggaacaaaattataagaagaggaaagt 3767554  T
Q  222 gaaggaaaaatgacaaatggagtgggatgtagggtacgtatttttctaactatttcannnnnnnaacaagtaaaaatgagattatatataaacaccaacg 321  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||    
T  3767555 gaaggaaaaatgacaaatggagtgggatgtagggtacgtatttttctaactatttcatttttttaacaagtaaaaatgagattatatataaacaccaacg 3767654  T
Q  322 aagaggccttaaaagcacccggtgtacca-caaagacctcaagggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgc 420  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  3767655 aagaggccttaaaagcacccggtgtaccaacaaagacctcaagggtccgtttgatggtcaggatagggagatatgatatgatacattaatcatatcctgc 3767754  T
Q  421 ttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagct 520  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3767755 ttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagct 3767854  T
Q  521 gagttataaattatccagatgagattagaatatcattccttatttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatag 620  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3767855 gagttataaattatccagatgagattagaatatcattccttatttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatag 3767954  T
Q  621 catgcattttctattataatcaataacatacc 652  Q
    |||| |||||||||||||||||||||||||||    
T  3767955 catgtattttctattataatcaataacatacc 3767986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 165; E-Value: 1e-87
Query Start/End: Original strand, 719 - 898
Target Start/End: Original strand, 3768052 - 3768232
Alignment:
Q  719 ttatcatgtgcgcatcaaacacatgataggattaatatcatgcccctat-cctatcatgaccatcaaacggatcctaatcttaaaaagaagtgacttttg 817  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3768052 ttatcatgtgcgcatcaaacacatgataggattaatatcatgccccttttcctatcatgaccatcaaacggatcctaatcttaaaaagaagtgacttttg 3768151  T
Q  818 gacatcaaaattttgatcttacctgtgtattttggtttttatgttaatttttttaactagtgtgtagaagataaaatgttt 898  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3768152 gacatcaaaattttgatcttacctgtgtattttggtttttatgttaatttttataactagtgtgtagaagataaaatgttt 3768232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 393 - 631
Target Start/End: Complemental strand, 34513924 - 34513686
Alignment:
Q  393 atgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatcttattttgactttcc 492  Q
    |||||| ||||||||||| ||||||||||||||| |||||||||||||||||||  |||||||||||||||| ||||| |||||| |||  |||||||||    
T  34513924 atgatatgatacattaattatatcctgcttaaatctcatgtttgatgcaccaaatggataggataaaataaaccatttttctatcatatcctgactttcc 34513825  T
Q  493 tttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttattatcttgatattctgttatttttaa 592  Q
    ||||| |||| |||| | ||||||||||| |||| ||||||||| |||| |||||||| |||||| ||||||||||||||||||||||||  ||||||||    
T  34513824 tttgtaatttctatcctgagtataagctgggttagaaattatcctgatgggattagaaaatcatttcttatttattatcttgatattctgccatttttaa 34513725  T
Q  593 aatattgtcgtttttaaaataatgatagcatgcattttc 631  Q
    ||||||||| ||||||||||||||||| |||| ||||||    
T  34513724 aatattgtcatttttaaaataatgataacatgtattttc 34513686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 135; E-Value: 8e-70
Query Start/End: Original strand, 361 - 652
Target Start/End: Complemental strand, 45499379 - 45499086
Alignment:
Q  361 aagggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaa 460  Q
    |||||| ||| ||||| || ||||||||||  | |||| |||| ||||||||||| || |||||||  |||||||||||||||||| |||||||||||||    
T  45499379 aagggtccgtgtgatgatcaggatagggaggcaagatatgatatattaatcatattcttcttaaatcacatgtttgatgcaccaaaatgataggataaaa 45499280  T
Q  461 taaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattcct 560  Q
    |||| |||||||||||| |||  |||||||||||||| ||||||||| | | |||| |||| |||| ||| ||||  |||| |||||||| ||||||| |    
T  45499279 taaaccatttctctatcctatcctgactttcctttgtaatttatatcctgaatataggctgggttagaaactatcatgatgggattagaagatcattctt 45499180  T
Q  561 tatttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagc--atgcattttctattataatcaataacatacc 652  Q
    ||||||||||||||||||||||  ||||| ||||||||||| |||||||||||||||||||  ||| ||||||||||||||| |||||||||||    
T  45499179 tatttattatcttgatattctgccattttgaaaatattgtcatttttaaaataatgatagcatatgtattttctattataattaataacatacc 45499086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 429 - 649
Target Start/End: Complemental strand, 37910797 - 37910578
Alignment:
Q  429 catgtttgatgcaccaaagtgataggataaaataaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttata 528  Q
    ||||||||||||||||||| |||| |||||||||||||||||  ||||| |||  |||||||| ||||| ||||||||||| ||||||||||| |||| |    
T  37910797 catgtttgatgcaccaaagggatacgataaaataaatcattttcctatcatatcctgactttcgtttgtaatttatatcatgagtataagctgggttaga 37910698  T
Q  529 aattatccagatgagattagaatatcattccttatttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcatt 628  Q
    |||||||| |||| |||||||| ||||||||||||||||||| |||||||||||  | ||||||||||||||| |||||||||||||||||||||| |||    
T  37910697 aattatcctgatgggattagaagatcattccttatttattattttgatattctgcca-ttttaaaatattgtcatttttaaaataatgatagcatgtatt 37910599  T
Q  629 ttctattataatcaataacat 649  Q
    |||||||||||| ||||||||    
T  37910598 ttctattataattaataacat 37910578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 368 - 649
Target Start/End: Complemental strand, 28116121 - 28115840
Alignment:
Q  368 cgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatca 467  Q
    ||||| |||||  ||||||||||  |||||| ||||||||||||||||  ||||||||| |||| ||||||||||| |||||||| ||||||||||| ||    
T  28116121 cgtttaatggtgaggatagggagccatgatatgatacattaatcatattatgcttaaatctcatatttgatgcacctaagtgataagataaaataaacca 28116022  T
Q  468 tttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttat 567  Q
    |||  ||||| |||  | |||||||||||| |||| |||| | |||||||| || |||| ||||||||| ||||  ||||||| ||||||| ||||||||    
T  28116021 ttttcctatcctatcctaactttcctttgtaatttctatcctgagtataagttgtgttagaaattatcctgatggaattagaagatcattctttatttat 28115922  T
Q  568 tatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacat 649  Q
    |||||||| ||| ||  ||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||| ||||||||    
T  28115921 tatcttgagattttgccatttttaaaatattgtcattttttaaattatgatagcatgcattttctattataattaataacat 28115840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 370 - 649
Target Start/End: Original strand, 34940259 - 34940538
Alignment:
Q  370 tttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatt 469  Q
    |||||||||| ||||||||||| |  |||  ||||||||||||| | ||  |||||| |||||||||||||||||||  |||||||||||||||| ||||    
T  34940259 tttgatggtcaggatagggagacagaatataatacattaatcatgttctctttaaatctcatgtttgatgcaccaaaaggataggataaaataaaccatt 34940358  T
Q  470 tctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttatta 569  Q
    |   |||| |||  |||||||||||||| |||| |||| | |||||| ||||| ||||||||||||| |||| |||||||| |||| | |||||||||||    
T  34940359 ttcatatcctatcctgactttcctttgtaatttctatcctgagtatatgctgatttataaattatcctgatgggattagaaaatcaattcttatttatta 34940458  T
Q  570 tcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacat 649  Q
    ||||||||||||    |||| |||||||| || ||||||||||||||||| |||| ||||||| ||||||| ||||||||    
T  34940459 tcttgatattcttcctttttaaaaatattatcatttttaaaataatgataacatgtattttctgttataattaataacat 34940538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 454 - 640
Target Start/End: Complemental strand, 5787410 - 5787224
Alignment:
Q  454 gataaaataaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatat 553  Q
    |||||||||||||||||  ||||| |||  ||| |||||||||| |||| |||    |||||| ||||||||| ||||||||| |||| ||||| || ||    
T  5787410 gataaaataaatcattttcctatcctatcatgattttcctttgtaatttctatgtcgagtatatgctgagttagaaattatcctgatgggattaaaagat 5787311  T
Q  554 cattccttatttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataat 640  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  5787310 cattccttatttattatcttgatattctgccatttttaaaatattgtcatttttaaaataatgatagcatgtattttctattataat 5787224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 485 - 640
Target Start/End: Complemental strand, 44290246 - 44290091
Alignment:
Q  485 gactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttattatcttgatattctgtt 584  Q
    ||||||||||||| ||||||||| | |||||| ||||||||| || ||||||  |||||||||||| ||||||  |||||||||||||||||||||||      
T  44290246 gactttcctttgtaatttatatcctgagtataggctgagttagaagttatcctaatgagattagaagatcattaattatttattatcttgatattctgcc 44290147  T
Q  585 atttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataat 640  Q
    |||||||||||||| || |||||||||||||||||||||| |||||||||||||||    
T  44290146 atttttaaaatattatcatttttaaaataatgatagcatgtattttctattataat 44290091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 491 - 649
Target Start/End: Original strand, 34513934 - 34514091
Alignment:
Q  491 cctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttattatcttgatattctgttattttt 590  Q
    ||||||| |||| |||| | |||||||| ||||||| ||||||||| || |||||||||| |||||| ||||||||||||||||||||||||  ||||||    
T  34513934 cctttgtaatttctatcttgagtataagatgagttagaaattatccggacgagattagaagatcatttcttatttattatcttgatattctgccattttt 34514033  T
Q  591 aaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacat 649  Q
    |||||||||||  ||||||||||||||||||||| |||||| |||||||| ||||||||    
T  34514034 aaaatattgtc-attttaaaataatgatagcatgtattttccattataattaataacat 34514091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 409 - 639
Target Start/End: Original strand, 17702135 - 17702365
Alignment:
Q  409 atcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaa-tcatttctctatcttattttgactttcctttgtcatttatatc 507  Q
    |||||||| | ||||||| |||||||||||||||||||| |||| ||||||||||| |  ||||| |||| ||| ||| ||||||||||| |||| ||||    
T  17702135 atcatatctttcttaaatctcatgtttgatgcaccaaagagataagataaaataaactgttttct-tatcctatcttgtctttcctttgtaatttttatc 17702233  T
Q  508 ataagtataagctgagttataaattatccagatgagattagaatatcattccttatttattatcttgatattctgttatttttaaaatattgtcgttttt 607  Q
     | |||||||  ||||||| ||| ||||| |||   ||||||| || ||| ||||||||||||| |||||||||   ||||||||||| ||||| |||||    
T  17702234 ctgagtataaattgagttagaaactatcctgatagaattagaagataatttcttatttattatcatgatattcttccatttttaaaatgttgtcattttt 17702333  T
Q  608 aaaataatgatagcatgcattttctattataa 639  Q
    |||||||||||| |||| ||||  ||||||||    
T  17702334 aaaataatgatatcatgtatttgttattataa 17702365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 369 - 456
Target Start/End: Complemental strand, 21342242 - 21342155
Alignment:
Q  369 gtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggat 456  Q
    ||||||||| |  ||||| |||| | |||| ||||||||||||||||||||||||||| ||||||||||||||| |||  ||||||||    
T  21342242 gtttgatggccaagatagagagacaggatatgatacattaatcatatcctgcttaaatctcatgtttgatgcacaaaatggataggat 21342155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 3781339 - 3781398
Alignment:
Q  22 gttgcaagatatgagaaggaagaagaacaaagtgatgaggaaatgtttggaaggcattatggt 84  Q
    ||||||||||||||||||||||||||||||||   |||||||||||| |||||||||| ||||    
T  3781339 gttgcaagatatgagaaggaagaagaacaaag---tgaggaaatgttgggaaggcattgtggt 3781398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 915 - 957
Target Start/End: Original strand, 3768259 - 3768301
Alignment:
Q  915 gcacatacaatgtcgtataatctctgtattttgatgtccatct 957  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  3768259 gcacatacaatgtcgtataatctctgtattttgatgttcatct 3768301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 553 - 619
Target Start/End: Original strand, 11138750 - 11138816
Alignment:
Q  553 tcattccttatttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgata 619  Q
    ||||| ||| ||||||||| ||||||||| | ||||||||||| ||||| |||||||||||||||||    
T  11138750 tcatttcttgtttattatcatgatattctttcatttttaaaatgttgtcatttttaaaataatgata 11138816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 368 - 440
Target Start/End: Complemental strand, 37911248 - 37911176
Alignment:
Q  368 cgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgc 440  Q
    |||||||||||| |||||||||||   |||| |||||||||| |||||||| || |||| |||||||||||||    
T  37911248 cgtttgatggtcaggatagggagacgggatatgatacattaaccatatcctactgaaatctcatgtttgatgc 37911176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 381 - 457
Target Start/End: Original strand, 53923655 - 53923731
Alignment:
Q  381 ggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggata 457  Q
    ||||| |||||||  ||| |||| ||||||||||| |  ||||| | |||||||||||||||||||| |||||||||    
T  53923655 ggataaggagataaaatatgatatattaatcatattcgacttaattatcatgtttgatgcaccaaagagataggata 53923731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 421 - 464
Target Start/End: Original strand, 11138663 - 11138706
Alignment:
Q  421 ttaaatttcatgtttgatgcaccaaagtgataggataaaataaa 464  Q
    |||||| ||||||||||| || ||||||||||||||||||||||    
T  11138663 ttaaatatcatgtttgatacatcaaagtgataggataaaataaa 11138706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 547 - 598
Target Start/End: Original strand, 53923864 - 53923915
Alignment:
Q  547 agaatatcattccttatttattatcttgatattctgttatttttaaaatatt 598  Q
    |||| ||||||||||| |||||||| ||||||||||| ||||||| ||||||    
T  53923864 agaagatcattccttaattattatcatgatattctgtcatttttataatatt 53923915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 718 - 752
Target Start/End: Complemental strand, 5787149 - 5787115
Alignment:
Q  718 gttatcatgtgcgcatcaaacacatgataggatta 752  Q
    |||||||||||||||||||||||||||||| ||||    
T  5787149 gttatcatgtgcgcatcaaacacatgatagtatta 5787115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 721 - 754
Target Start/End: Original strand, 34940610 - 34940643
Alignment:
Q  721 atcatgtgcgcatcaaacacatgataggattaat 754  Q
    |||||||||||||||||||||||||| |||||||    
T  34940610 atcatgtgcgcatcaaacacatgatatgattaat 34940643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 170; Significance: 1e-90; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 170; E-Value: 1e-90
Query Start/End: Original strand, 368 - 649
Target Start/End: Complemental strand, 28623108 - 28622827
Alignment:
Q  368 cgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatca 467  Q
    |||||||||||| ||||||||||| |||||| |||||||||||||||||||  ||||||| ||||||||||||||||||| ||||| ||||||||||  |    
T  28623108 cgtttgatggtcaggatagggagacatgatatgatacattaatcatatcctatttaaattccatgtttgatgcaccaaagggatagaataaaataaacta 28623009  T
Q  468 tttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttat 567  Q
    ||| |||||| |||  |||||||||||||| |||| |||| | ||||||||||| |||| ||||||||| ||||||||||||| ||||||||||||||||    
T  28623008 tttttctatcctatcctgactttcctttgtaatttttatcctgagtataagctgtgttagaaattatcctgatgagattagaagatcattccttatttat 28622909  T
Q  568 tatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacat 649  Q
    |||||||||||||||  ||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||| ||||||||    
T  28622908 tatcttgatattctgcgatttttaaaatattgtcattttttaaataatgatagcatgtattttctattataattaataacat 28622827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 135; E-Value: 8e-70
Query Start/End: Original strand, 361 - 623
Target Start/End: Original strand, 49549473 - 49549734
Alignment:
Q  361 aagggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaa 460  Q
    |||||| |||||||||||| |||||| |||  | |||| ||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||    
T  49549473 aagggtccgtttgatggtcaggatagtgaggcaagatatgatacattaatcatatcctgcttaaatctcatatttgatgcaccaaagggataggataaaa 49549572  T
Q  461 taaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattcct 560  Q
    ||||||||||| ||||| |||  |||||||||||||| |||||||| || ||||||   || |||| || ||||||  ||| |||| ||| |||||||||    
T  49549573 taaatcatttccctatcatatcctgactttcctttgtaatttatat-atgagtatagattgggttaaaagttatcctaatgggatttgaagatcattcct 49549671  T
Q  561 tatttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcat 623  Q
    ||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||    
T  49549672 tatttattatcttgatattctgccatttttaaaatattgtcatttttaaaataatgatagcat 49549734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 362 - 601
Target Start/End: Complemental strand, 37347213 - 37346974
Alignment:
Q  362 agggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaat 461  Q
    ||||| |||||||||||| ||||||||||| |  ||| ||||||||||||||||| ||||||||| | |||||||||||||||||| |||| ||||||||    
T  37347213 agggtgcgtttgatggtcaggatagggagacagaatatgatacattaatcatatcttgcttaaatcttatgtttgatgcaccaaagggatatgataaaat 37347114  T
Q  462 aaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattcctt 561  Q
    ||| ||||| |||||| |||  ||| |||||||||| |||| |||| | |||||| | || |||| ||||||||  |||| |||||||| ||||||||||    
T  37347113 aaaccatttttctatcctatcctgattttcctttgtaatttctatcctgagtatacgatgggttagaaattatcatgatgggattagaagatcattcctt 37347014  T
Q  562 atttattatcttgatattctgttatttttaaaatattgtc 601  Q
    |||||||||| ||||||||||  ||||| |||||||||||    
T  37347013 atttattatcctgatattctgccattttaaaaatattgtc 37346974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 368 - 636
Target Start/End: Original strand, 19909968 - 19910236
Alignment:
Q  368 cgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatca 467  Q
    |||||||||||  |||||| |||| |  ||| ||||||||||| ||||  ||||||||| |||||||||||||| ||||| |||| ||||||||||| ||    
T  19909968 cgtttgatggttaggatagagagaca--atatgatacattaattatattgtgcttaaatatcatgtttgatgcatcaaagagataagataaaataaacca 19910065  T
Q  468 tttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatcc--agatgagattagaatatcattccttattt 565  Q
    ||| |||||| |||  |||||||||||| | |||  |||| | |||||    || |||| |||||||||  | | |||||||||| ||||| |||||||     
T  19910066 tttttctatcgtatactgactttcctttataattgttatcctgagtatttaatgggttagaaattatcctaataagagattagaagatcatgccttatta 19910165  T
Q  566 attatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctatta 636  Q
    |||||||||||||| ||  ||||||||||||||    ||||||||||||| |||||||| |||||||||||    
T  19910166 attatcttgatattttgcaatttttaaaatatttatatttttaaaataataatagcatgtattttctatta 19910236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 369 - 596
Target Start/End: Complemental strand, 10306987 - 10306758
Alignment:
Q  369 gtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcat 468  Q
    ||||||||||| | ||||| | ||||||||  ||| |||||||||||  | | ||||| |||||||||||||| ||||  || || |||||||||| |||    
T  10306987 gtttgatggtcagtataggaaaatatgatataatatattaatcatattattcataaatctcatgtttgatgcatcaaatagagagaataaaataaaccat 10306888  T
Q  469 ttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagat--tagaatatcattccttattta 566  Q
    ||  ||||  |||  ||| ||||||| || |||| |||| | |||||||||||  ||| ||| ||||  |||  |||  || || |||||| ||||||||    
T  10306887 tttcctattatatcatgattttccttcgtaatttttatcttgagtataagctgcattagaaactatcatgataggattataaaagatcatttcttattta 10306788  T
Q  567 ttatcttgatattctgttatttttaaaata 596  Q
    ||||| ||||||| ||| ||||||||||||    
T  10306787 ttatcatgatattttgtcatttttaaaata 10306758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 395 - 464
Target Start/End: Original strand, 48527377 - 48527446
Alignment:
Q  395 gatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaa 464  Q
    |||| |||| ||| |||||||| |||||||||||||||||||||||| ||||  |||| |||||||||||    
T  48527377 gatatgatatatttatcatatcttgcttaaatttcatgtttgatgcatcaaaaagatatgataaaataaa 48527446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 409 - 470
Target Start/End: Original strand, 52267631 - 52267692
Alignment:
Q  409 atcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcattt 470  Q
    ||||||| || ||||||||||||||| |||| ||||||| |||| |||||||||||||||||    
T  52267631 atcatattctacttaaatttcatgttcgatgtaccaaagagatatgataaaataaatcattt 52267692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 718 - 754
Target Start/End: Complemental strand, 37346204 - 37346168
Alignment:
Q  718 gttatcatgtgcgcatcaaacacatgataggattaat 754  Q
    |||||||||||||||||||||||||||||||||||||    
T  37346204 gttatcatgtgcgcatcaaacacatgataggattaat 37346168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 718 - 753
Target Start/End: Original strand, 52268254 - 52268289
Alignment:
Q  718 gttatcatgtgcgcatcaaacacatgataggattaa 753  Q
    ||||||||||||||||||||||||||||||||||||    
T  52268254 gttatcatgtgcgcatcaaacacatgataggattaa 52268289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 718 - 754
Target Start/End: Original strand, 19910328 - 19910364
Alignment:
Q  718 gttatcatgtgcgcatcaaacacatgataggattaat 754  Q
    ||||||||| |||||||||||||||||||||||||||    
T  19910328 gttatcatgggcgcatcaaacacatgataggattaat 19910364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 588 - 624
Target Start/End: Complemental strand, 49549889 - 49549853
Alignment:
Q  588 tttaaaatattgtcgtttttaaaataatgatagcatg 624  Q
    |||||||||||||| ||||||||||||||||||||||    
T  49549889 tttaaaatattgtcatttttaaaataatgatagcatg 49549853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 719 - 750
Target Start/End: Original strand, 30952148 - 30952179
Alignment:
Q  719 ttatcatgtgcgcatcaaacacatgataggat 750  Q
    ||||||||||||||||||||||||||||||||    
T  30952148 ttatcatgtgcgcatcaaacacatgataggat 30952179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 543 - 612
Target Start/End: Complemental strand, 12856892 - 12856822
Alignment:
Q  543 gattagaatatcattccttatttattatcttgatattctgttatttttaa-aatattgtcgtttttaaaat 612  Q
    |||||||| ||||||| |||||||||||| ||||||| || ||||||||| |   ||||||||||||||||    
T  12856892 gattagaaaatcattctttatttattatcatgatattatgctatttttaagacgtttgtcgtttttaaaat 12856822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 382 - 507
Target Start/End: Complemental strand, 35509016 - 35508891
Alignment:
Q  382 gatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatcttat 481  Q
    |||||||||| |  ||| |||| ||| |||||||  | ||||||| ||||||||||| ||| |||  |||||||||||||||| |||||   |||| |||    
T  35509016 gatagggagacagtatatgatatatttatcatattatacttaaatctcatgtttgatccactaaatagataggataaaataaaccattttcttatcctat 35508917  T
Q  482 tttgactttcctttgtcatttatatc 507  Q
    |  ||||| ||||||| |||| ||||    
T  35508916 tacgacttgcctttgtaatttttatc 35508891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 165; Significance: 1e-87; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 165; E-Value: 1e-87
Query Start/End: Original strand, 368 - 652
Target Start/End: Original strand, 29860834 - 29861117
Alignment:
Q  368 cgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatca 467  Q
    |||||||||| | | ||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||    
T  29860834 cgtttgatggccagtatagggagacatgatatgatacattaatcatattctgcttaaatttcatgtttgatgcaccaaagagataggataaaataaacca 29860933  T
Q  468 tttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttat 567  Q
    |||| ||||| |||  |||||||||||||| ||||||||| | |||||| ||| ||||| ||||||||| |||| |||||||| ||||||||||||||||    
T  29860934 tttccctatcatatcatgactttcctttgtaatttatatcctgagtataggctaagttagaaattatcctgatgggattagaagatcattccttatttat 29861033  T
Q  568 tatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacatacc 652  Q
    |||||||||||||||  |||||| |||||||||| ||||||||||| | |||||||| ||||||||||||||| |||||||||||    
T  29861034 tatcttgatattctgccattttt-aaatattgtcatttttaaaatagttatagcatgtattttctattataattaataacatacc 29861117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 369 - 647
Target Start/End: Complemental strand, 33008189 - 33007914
Alignment:
Q  369 gtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcat 468  Q
    ||||||||||| ||||||||||| | |||| ||||||||||| ||||||||||||||| ||| |||||||  ||||||| ||||||||||||||||||||    
T  33008189 gtttgatggtcaggatagggagacaggatatgatacattaattatatcctgcttaaatatcacgtttgatagaccaaagggataggataaaataaatcat 33008090  T
Q  469 ttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttatt 568  Q
    || |||||| |||  |||||||||||||| |||| |||| | ||||||||||| |||| ||||||||| |||| |||||||| |||||||||||||||||    
T  33008089 tt-tctatcatatcctgactttcctttgtaatttttatcctgagtataagctgggttagaaattatcctgatgggattagaagatcattccttatttatt 33007991  T
Q  569 atcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataac 647  Q
    ||||||||||||||| ||| ||||||||||||| |||||||||||||||||| |||  | |||||||||||| ||||||    
T  33007990 atcttgatattctgtcattattaaaatattgtcatttttaaaataatgataggatg--tattctattataattaataac 33007914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 137; E-Value: 5e-71
Query Start/End: Original strand, 405 - 649
Target Start/End: Original strand, 33134090 - 33134333
Alignment:
Q  405 attaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatcttattttgactttcctttgtcatttat 504  Q
    |||||||||||||||||||||| | |||||| ||||||||||| |||||||||||||||| |||||  ||||| |||  |||||||||||||| |||| |    
T  33134090 attaatcatatcctgcttaaatcttatgtttaatgcaccaaagggataggataaaataaaccattttcctatcctatcctgactttcctttgtaatttct 33134189  T
Q  505 atcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttattatcttgatattctgttatttttaaaatattgtcgtt 604  Q
    ||||| |||||| |||  |||| |||||||||  |||  ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||    
T  33134190 atcatgagtataggctaggttagaaattatcct-atggaattagaagatcattccttatttattatcttgatattctgtcatttttaaaatattgtcatt 33134288  T
Q  605 tttaaaataatgatagcatgcattttctattataatcaataacat 649  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||    
T  33134289 tttaaaataatgatagcatgtattttctattataattaataacat 33134333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 130; E-Value: 7e-67
Query Start/End: Original strand, 369 - 646
Target Start/End: Complemental strand, 15922379 - 15922102
Alignment:
Q  369 gtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcat 468  Q
    ||||||||||| |||||| || | | |||| ||||||||||||||||| ||||||||| |||||||||||||| |||||||||| |||||||||||| ||    
T  15922379 gtttgatggtcaggatagagatacaggatatgatacattaatcatatcttgcttaaatctcatgtttgatgcatcaaagtgatatgataaaataaattat 15922280  T
Q  469 ttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttatt 568  Q
    || |||||| |||  |||||||||||||| |||| |||  | |||||  | || |||| ||||||||| |||| |||||||| |||| |||||||| |||    
T  15922279 ttttctatcatatcatgactttcctttgtaatttctattttgagtatcggttgggttagaaattatcctgatgggattagaagatcaatccttattaatt 15922180  T
Q  569 atcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataa 646  Q
    ||||||||||||||   ||||| |||||||||| |||||||||||||||||||||| ||||||||||||||| |||||    
T  15922179 atcttgatattctgcctttttttaaatattgtcatttttaaaataatgatagcatgtattttctattataattaataa 15922102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 363 - 650
Target Start/End: Original strand, 31077809 - 31078092
Alignment:
Q  363 gggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaata 462  Q
    |||| ||||| |||||| ||||||  ||||| |||| |||||||||||||||| || ||||||| | |||||||||||||||||| | ||||||||||||    
T  31077809 gggtccgtttaatggtcaggatagacagataggatatgatacattaatcatattctacttaaatctaatgtttgatgcaccaaagggttaggataaaata 31077908  T
Q  463 aatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattcctta 562  Q
    ||  ||||   |||  |||  |||||||||||||| ||||||||| | |||||||||||||||| ||||||||| |||| |||||||| |||||||||||    
T  31077909 aactattttcttattctatcatgactttcctttgtaatttatatcctgagtataagctgagttagaaattatcctgatg-gattagaagatcattcctta 31078007  T
Q  563 tttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacata 650  Q
    |||||||   ||||||| | | ||| |||||||||| || | |||||||||| ||||||||| ||||||||||||||| |||||||||    
T  31078008 tttatta---tgatattttatcattcttaaaatattttcatatttaaaataacgatagcatgtattttctattataattaataacata 31078092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 369 - 596
Target Start/End: Complemental strand, 7883969 - 7883742
Alignment:
Q  369 gtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcat 468  Q
    ||||||||||| ||||||||||| | |||| ||||||||||||||||||||||||||| | |||||||||||| ||||| |||||||||||||||| |||    
T  7883969 gtttgatggtcaggatagggagacaggatatgatacattaatcatatcctgcttaaatcttatgtttgatgcatcaaagggataggataaaataaaccat 7883870  T
Q  469 ttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttatt 568  Q
    ||  ||||| |||| ||| |||||||||| |||| |||  | |||||| ||||  ||| ||||||||| |||| |||||||| |||||||||||||||||    
T  7883869 tttcctatcctattctgaatttcctttgtaatttctattctgagtataggctggattagaaattatcctgatgggattagaagatcattccttatttatt 7883770  T
Q  569 atcttgatattctgttatttttaaaata 596  Q
    ||||| ||||||||  ||||||||||||    
T  7883769 atctttatattctgccatttttaaaata 7883742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 407 - 649
Target Start/End: Complemental strand, 25347219 - 25346967
Alignment:
Q  407 taatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatcttattttgactttcctttgtcatttatat 506  Q
    |||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||| |||||  ||||| |||  ||| |||||||||| |||| |||    
T  25347219 taatcatatcctccttaaatctcatgtttgatgcaccaaagggataggataaaataaaccattttcctatcatatcctgattttcctttgtaatttctat 25347120  T
Q  507 cataagtataagct----------gagttataaattatccagatgagattagaatatcattccttatttattatcttgatattctgttatttttaaaata 596  Q
    ||| ||||||||||          | |||| ||||||||| || | |||||||| ||||||  ||||||| |||||||||||| ||  ||||||||||||    
T  25347119 cattagtataagctagtataagatgggttagaaattatcctgacgggattagaacatcattttttatttactatcttgatattatgccatttttaaaata 25347020  T
Q  597 ttgtcgtttttaaaataatgatagcatgcattttctattataatcaataacat 649  Q
    ||||| |||||||||||||||||||||| |||||| ||| |||| ||||||||    
T  25347019 ttgtcatttttaaaataatgatagcatgtattttccattgtaattaataacat 25346967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 362 - 596
Target Start/End: Complemental strand, 5868472 - 5868239
Alignment:
Q  362 agggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaat 461  Q
    ||||| |||||||||||| ||||||||||| | |||| |||| |||||||| ||||| ||||||| |||||||||||||||||||| |||||||||||||    
T  5868472 agggtccgtttgatggtcaggatagggagacaagatatgatatattaatcacatcctacttaaatctcatgtttgatgcaccaaagagataggataaaat 5868373  T
Q  462 aaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattcctt 561  Q
    ||| |||||  ||||| |||   ||||||||||||| |||| |||| | |||||  |||| |||| ||| ||||| |||| | |||||| ||||||| ||    
T  5868372 aaaccattttcctatcctatcccgactttcctttgtaatttctatcttgagtattggctgggttagaaactatcctgatg-ggttagaagatcattcgtt 5868274  T
Q  562 atttattatcttgatattctgttatttttaaaata 596  Q
    |||||||||| ||||||||||  ||||||||||||    
T  5868273 atttattatcgtgatattctgccatttttaaaata 5868239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 362 - 502
Target Start/End: Complemental strand, 42684114 - 42683974
Alignment:
Q  362 agggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaat 461  Q
    |||||||||||||||||  ||||||||||| |||||| ||||||||||||||||||||||||||| |||||||| | ||| ||||| |||| ||||||||    
T  42684114 agggttcgtttgatggttaggatagggagacatgatatgatacattaatcatatcctgcttaaatctcatgtttcaagcatcaaagggataagataaaat 42684015  T
Q  462 aaatcatttctctatcttattttgactttcctttgtcattt 502  Q
    ||||||||| |||||| |||  |||||||||||||| ||||    
T  42684014 aaatcatttttctatcatatcctgactttcctttgtaattt 42683974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 406 - 573
Target Start/End: Complemental strand, 21092537 - 21092372
Alignment:
Q  406 ttaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatcttattttgactttcctttgtcatttata 505  Q
    |||||||||||||| ||||||||||||||||||||||||||  |||||||||||||   ||||||  |||| ||||  | |||||||| ||| |||| ||    
T  21092537 ttaatcatatcctgtttaaatttcatgtttgatgcaccaaatggataggataaaatc--tcattttcctatattatcctcactttcctatgtaatttcta 21092440  T
Q  506 tcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttattatctt 573  Q
    || | | ||||| |||||||||||||||||| |||||||||||||||||||| |||||| ||||||||    
T  21092439 tcctgaatataaactgagttataaattatcctgatgagattagaatatcatttcttattcattatctt 21092372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 381 - 507
Target Start/End: Original strand, 2498915 - 2499041
Alignment:
Q  381 ggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatctta 480  Q
    |||||| ||||  ||||| |||| ||||||||||| || ||||||| |||||||||||||||| ||| |||| | ||||||||||||||| |||||||||    
T  2498915 ggatagagagacgtgatatgatatattaatcatattctacttaaatatcatgtttgatgcacccaagagatatggtaaaataaatcatttttctatctta 2499014  T
Q  481 ttttgactttcctttgtcatttatatc 507  Q
    | |||||| | |||||| |||| ||||    
T  2499015 tcttgactattctttgtaatttttatc 2499041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 585 - 649
Target Start/End: Complemental strand, 21091242 - 21091178
Alignment:
Q  585 atttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacat 649  Q
    |||||| |||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||    
T  21091242 atttttgaaatattgtcatttttaaaataatgatagcatgtattttctattataattaataacat 21091178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 718 - 754
Target Start/End: Complemental strand, 25346898 - 25346862
Alignment:
Q  718 gttatcatgtgcgcatcaaacacatgataggattaat 754  Q
    |||||||||||||||||||||||||||||||||||||    
T  25346898 gttatcatgtgcgcatcaaacacatgataggattaat 25346862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 718 - 754
Target Start/End: Original strand, 33134402 - 33134438
Alignment:
Q  718 gttatcatgtgcgcatcaaacacatgataggattaat 754  Q
    |||||||||||||||||||||||||||||||||||||    
T  33134402 gttatcatgtgcgcatcaaacacatgataggattaat 33134438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 718 - 753
Target Start/End: Complemental strand, 21091109 - 21091074
Alignment:
Q  718 gttatcatgtgcgcatcaaacacatgataggattaa 753  Q
    ||||||||||||||||||||||||||||||||||||    
T  21091109 gttatcatgtgcgcatcaaacacatgataggattaa 21091074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 718 - 754
Target Start/End: Original strand, 31078184 - 31078220
Alignment:
Q  718 gttatcatgtgcgcatcaaacacatgataggattaat 754  Q
    |||||||||||||||||||||||||||||| ||||||    
T  31078184 gttatcatgtgcgcatcaaacacatgatagaattaat 31078220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 718 - 754
Target Start/End: Original strand, 39351585 - 39351621
Alignment:
Q  718 gttatcatgtgcgcatcaaacacatgataggattaat 754  Q
    ||||||||||||||||||||||||||||| |||||||    
T  39351585 gttatcatgtgcgcatcaaacacatgatatgattaat 39351621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 585 - 649
Target Start/End: Complemental strand, 42683912 - 42683848
Alignment:
Q  585 atttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacat 649  Q
    |||||||||||||||||  ||| |||||||| ||| |||  ||||||||||||||| ||||||||    
T  42683912 atttttaaaatattgtcaatttcaaaataataataacatatattttctattataattaataacat 42683848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 718 - 755
Target Start/End: Complemental strand, 33007843 - 33007806
Alignment:
Q  718 gttatcatgtgcgcatcaaacacatgataggattaata 755  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  33007843 gttatcatgtgtgcatcaaacacatgatatgattaata 33007806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 158; Significance: 1e-83; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 362 - 647
Target Start/End: Complemental strand, 40619897 - 40619612
Alignment:
Q  362 agggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaat 461  Q
    ||||| |||||||||||| |||||| |||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||    
T  40619897 agggtgcgtttgatggtcaggatagagagataggatatgatacattaatcatatcctgcttaaatctcatgtttgatgcaccaaagggatatgataaaat 40619798  T
Q  462 aaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattcctt 561  Q
    ||| ||||| |||||| |||  ||||||||||| || |||| |||| | |||||| | || |||| ||||||| |  ||| |||||||| ||||||||||    
T  40619797 aaaccatttttctatcatatcctgactttccttcgtaatttctatcctgagtataggttgggttagaaattatacttatgggattagaagatcattcctt 40619698  T
Q  562 atttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataac 647  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||| ||||||    
T  40619697 atttattaccttgatattctgttatttttaaaatattgtcatttttaaaataatgatagcatgtattttttattataattaataac 40619612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 400 - 649
Target Start/End: Original strand, 41595239 - 41595488
Alignment:
Q  400 gatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatcttattttgactttcctttgtca 499  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||| ||| |||||||||||| ||| | |||||| |||| ||||||||| |||| |    
T  41595239 gatacattaatcatatcgtgcttaaatctcatgtttgatgcaccaaagagattggataaaataaaccatatttctatcatattctgactttccattgtaa 41595338  T
Q  500 tttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttattatcttgatattctgttatttttaaaatattg 599  Q
    ||| |||| | |||||||| ||||||| ||||||||| |||| |||||||| ||||||  |||||||||||||||||||||| | |||||||||||||||    
T  41595339 tttctatcctgagtataagttgagttagaaattatcctgatgggattagaagatcattttttatttattatcttgatattctttcatttttaaaatattg 41595438  T
Q  600 tcgtttttaaaataatgatagcatgcattttctattataatcaataacat 649  Q
    || |||||||||||||||||||||| ||||||||||||||| ||||||||    
T  41595439 tcatttttaaaataatgatagcatgtattttctattataattaataacat 41595488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 137; E-Value: 5e-71
Query Start/End: Original strand, 361 - 645
Target Start/End: Complemental strand, 13996355 - 13996071
Alignment:
Q  361 aagggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaa 460  Q
    |||||| |||||||||||| ||||||| |||   |||| ||||||||||| ||||||| ||||||| |||||||||||||||||||| || | |||||||    
T  13996355 aagggtgcgtttgatggtcaggataggaagacgggatatgatacattaattatatcctccttaaatctcatgtttgatgcaccaaagggacatgataaaa 13996256  T
Q  461 taaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattcct 560  Q
    |||||||| | |||||| |||  |||||||||||||| |||| |||| | |||||||| || |||| ||||||||| |||| |||||||| |||||||||    
T  13996255 taaatcatgtttctatcatatcctgactttcctttgtaatttctatcctgagtataagttgggttagaaattatcctgatgggattagaagatcattcct 13996156  T
Q  561 tatttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaata 645  Q
    |||||||||| ||||||||||   ||||| ||||||||||| |||||||||||||||||||||| |||| |||||||||| ||||    
T  13996155 tatttattattttgatattcttccattttaaaaatattgtcatttttaaaataatgatagcatgtatttcctattataattaata 13996071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 381 - 649
Target Start/End: Original strand, 27338700 - 27338958
Alignment:
Q  381 ggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatctta 480  Q
    ||||||||||||| |||| ||||||||||||||||||| ||||||| ||||||||||||||| ||| ||||| ||||||||||| ||||| |||||| ||    
T  27338700 ggatagggagataggatatgatacattaatcatatcctacttaaatctcatgtttgatgcactaaaatgatatgataaaataaaccatttttctatccta 27338799  T
Q  481 ttttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttattatcttgatattc 580  Q
    |  |||||||||||||| |||| ||            ||||||||| |||| |||| |||| ||||| ||||||||||||||||||||||||||||||||    
T  27338800 tcctgactttcctttgtaatttttag-----------gctgagttagaaatgatcctgatgggattataatatcattccttatttattatcttgatattc 27338888  T
Q  581 tgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctatt-ataatcaataacat 649  Q
    ||| |||||||||||||| || |||||||||||||||||||||| |||||||||| ||||| ||||||||    
T  27338889 tgtcatttttaaaatattatcatttttaaaataatgatagcatgtattttctattaataattaataacat 27338958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 362 - 635
Target Start/End: Complemental strand, 13349702 - 13349429
Alignment:
Q  362 agggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaat 461  Q
    ||||| |||||||| ||| ||||||| ||| | |||| ||||||||||| ||||||| ||||||| |||||||||||||||||||  |||||||||||||    
T  13349702 agggtccgtttgatagtcaggataggaagacaggatatgatacattaattatatcctacttaaatctcatgtttgatgcaccaaatggataggataaaat 13349603  T
Q  462 aaatcat-ttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattcct 560  Q
    |||  || |||| |||| | |  | |||||||||||| |||| |||| |||||||| | ||||||| ||||||||| |||| |||||||| |||||||||    
T  13349602 aaacaatattct-tatcctctcctaactttcctttgtaatttctatcctaagtatatgatgagttagaaattatcctgatgcgattagaagatcattcct 13349504  T
Q  561 tatttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctatt 635  Q
    ||||||||||||||||||||||  |||||| ||||||| || |||||||||||||||||| ||| ||||||||||    
T  13349503 tatttattatcttgatattctgccattttttaaatattatcatttttaaaataatgatagaatgtattttctatt 13349429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 485 - 650
Target Start/End: Original strand, 19695769 - 19695932
Alignment:
Q  485 gactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttattatcttgatattctgtt 584  Q
    |||||| |||||| |||| |||| | |||||||||||||||| ||||||||| ||||  ||||||| ||||| |||||||||||||||||||||||  |     
T  19695769 gacttttctttgtaatttctatcttgagtataagctgagttagaaattatcctgatggaattagaagatcatcccttatttattatcttgatattc--tc 19695866  T
Q  585 atttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacata 650  Q
    |||||||||||||||||  ||||||||||||||||||||  ||||||||||||||| |||||||||    
T  19695867 atttttaaaatattgtcacttttaaaataatgatagcatatattttctattataattaataacata 19695932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 362 - 549
Target Start/End: Original strand, 37485562 - 37485746
Alignment:
Q  362 agggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaat 461  Q
    |||||||||||||||||  |||||| |||| | ||||  ||| |||||||||||||||||||||| |||||||||||||||||||  |||| ||||||||    
T  37485562 agggttcgtttgatggta-ggatagagagacaagatataatatattaatcatatcctgcttaaatctcatgtttgatgcaccaaaaagatatgataaaat 37485660  T
Q  462 aaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattaga 549  Q
    ||| |||||  ||||| |||  |||||||||||||| |||| ||||||  | ||| ||||||||| ||||||||| |||| |||||||    
T  37485661 aaaccattttcctatcatatcctgactttcctttgtaatttctatcat--gaatatgctgagttagaaattatcctgatgggattaga 37485746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 362 - 476
Target Start/End: Original strand, 19695466 - 19695580
Alignment:
Q  362 agggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaat 461  Q
    ||||| ||||||||| || |||||| |||| | |||| ||||||||||||||||||| | ||||| |||||||||||||||||||  |||||| || |||    
T  19695466 agggtgcgtttgatgatcaggatagagagacaggatatgatacattaatcatatcctacgtaaatctcatgtttgatgcaccaaatggataggctagaat 19695565  T
Q  462 aaatcatttctctat 476  Q
    ||| ||||| |||||    
T  19695566 aaaccatttttctat 19695580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 586 - 649
Target Start/End: Original strand, 37485757 - 37485820
Alignment:
Q  586 tttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacat 649  Q
    ||||| ||||||| || ||||||||||||||||| |||| ||||||||||||||| ||||||||    
T  37485757 ttttttaaatattttcatttttaaaataatgataacatgtattttctattataattaataacat 37485820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 719 - 754
Target Start/End: Complemental strand, 13995584 - 13995549
Alignment:
Q  719 ttatcatgtgcgcatcaaacacatgataggattaat 754  Q
    ||||||||||||||||||||||||||||||||||||    
T  13995584 ttatcatgtgcgcatcaaacacatgataggattaat 13995549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 484 - 579
Target Start/End: Original strand, 34355880 - 34355975
Alignment:
Q  484 tgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttattatcttgatatt 579  Q
    |||||| ||||||| |||| ||||   |||||||| ||  |||||||||| ||||||  ||||||||  ||||||||||||||||||| |||||||    
T  34355880 tgacttgcctttgtaatttttatcccgagtataagttggattataaattacccagataggattagaaattcattccttatttattatcatgatatt 34355975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 718 - 754
Target Start/End: Original strand, 27339027 - 27339063
Alignment:
Q  718 gttatcatgtgcgcatcaaacacatgataggattaat 754  Q
    ||||||||||||||||||||||||||||| |||||||    
T  27339027 gttatcatgtgcgcatcaaacacatgatatgattaat 27339063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 544 - 619
Target Start/End: Complemental strand, 15665417 - 15665342
Alignment:
Q  544 attagaatatcattccttatttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgata 619  Q
    ||||||| || |||| |||||||||||| |||| || ||| ||||||||||| ||| | |||||||||||| ||||    
T  15665417 attagaagataattctttatttattatcatgattttttgtcatttttaaaatgttgacatttttaaaataacgata 15665342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 718 - 756
Target Start/End: Complemental strand, 40619541 - 40619503
Alignment:
Q  718 gttatcatgtgcgcatcaaacacatgataggattaatat 756  Q
    |||||||||||| |||||||||||||||| |||||||||    
T  40619541 gttatcatgtgcacatcaaacacatgataagattaatat 40619503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 141; Significance: 2e-73; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 369 - 649
Target Start/End: Original strand, 43596799 - 43597079
Alignment:
Q  369 gtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcat 468  Q
    ||||||||| | ||||||||||  | |||| ||||||||||||||||||  ||||||| ||||||||||||||| |||| ||||||||||||||||||||    
T  43596799 gtttgatggccaggatagggagtcaggatatgatacattaatcatatccgacttaaatatcatgtttgatgcacgaaagagataggataaaataaatcat 43596898  T
Q  469 ttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttatt 568  Q
    || |||||| |||   ||||||||||||| ||||||||| | ||||||   ||||||| ||||||||| ||||||||||||| |||| |||||||||||     
T  43596899 ttttctatcatatcccgactttcctttgtaatttatatcctgagtatagattgagttaaaaattatcctgatgagattagaagatcactccttatttata 43596998  T
Q  569 atcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacat 649  Q
    ||||| ||||||||  ||||||||||||||||| |||| |||||||| |||||||| ||||||||||||||| ||||||||    
T  43596999 atctttatattctgccatttttaaaatattgtcattttaaaaataatcatagcatgtattttctattataattaataacat 43597079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 132; E-Value: 5e-68
Query Start/End: Original strand, 368 - 651
Target Start/End: Original strand, 37246131 - 37246412
Alignment:
Q  368 cgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatca 467  Q
    |||||||||||   |||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||| |||  |||||||||||||||  ||    
T  37246131 cgtttgatggtaaagatagggagacatgatatgatacattaatcatatcctgcttaaatatcatgtttgatgcactaaaaagataggataaaataaccca 37246230  T
Q  468 tttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttat 567  Q
    |||| ||| | |||| |||||||||||||| ||||||||| | |||||| |||  |||| ||||||||| || | |||||||| ||||||||||||||||    
T  37246231 tttcccta-catattctgactttcctttgtaatttatatcttgagtataggctaggttagaaattatcctgaggggattagaagatcattccttatttat 37246329  T
Q  568 tatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacatac 651  Q
    |||||||||||||||  |||||| |||||||||  ||||||||||| | ||| |||| ||||||||||||||| ||||||||||    
T  37246330 tatcttgatattctgccattttt-aaatattgttatttttaaaatagttataacatgtattttctattataattaataacatac 37246412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 369 - 652
Target Start/End: Original strand, 16295305 - 16295586
Alignment:
Q  369 gtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcat 468  Q
    |||||||||||  ||||| |||| || ||| ||||||||||||||||||||||||||| ||||||||||||||| |||| ||||| ||| ||||||  ||    
T  16295305 gtttgatggtcaagatagagagacataatatgatacattaatcatatcctgcttaaatatcatgtttgatgcactaaagagatagcatacaataaacaat 16295404  T
Q  469 ttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttatt 568  Q
    ||| ||||| |||  |||||||||||||| ||||||||| | ||||||  ||  |||| ||||||| | |||| |||| ||| |||||||||||||||||    
T  16295405 ttccctatcatatcctgactttcctttgtaatttatatcctgagtatagactaggttagaaattat-ctgatgggattggaagatcattccttatttatt 16295503  T
Q  569 atcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacatacc 652  Q
    |||||||||||||   |||||| |||||||||| ||||||||||| | |||||||| ||||||||||||||| |||||||||||    
T  16295504 atcttgatattctaccattttt-aaatattgtcatttttaaaatagttatagcatgtattttctattataattaataacatacc 16295586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 369 - 652
Target Start/End: Original strand, 16303007 - 16303288
Alignment:
Q  369 gtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcat 468  Q
    |||||||||||  ||||| |||| || ||| ||||||||||||||||||||||||||| ||||||||||||||| |||| ||||| ||| ||||||  ||    
T  16303007 gtttgatggtcaagatagagagacataatatgatacattaatcatatcctgcttaaatatcatgtttgatgcactaaagagatagcatacaataaacaat 16303106  T
Q  469 ttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttatt 568  Q
    ||| ||||| |||  |||||||||||||| ||||||||| | ||||||  ||  |||| ||||||| | |||| |||| ||| |||||||||||||||||    
T  16303107 ttccctatcatatcctgactttcctttgtaatttatatcctgagtatagactaggttagaaattat-ctgatgggattggaagatcattccttatttatt 16303205  T
Q  569 atcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacatacc 652  Q
    |||||||||||||   |||||| |||||||||| ||||||||||| | |||||||| ||||||||||||||| |||||||||||    
T  16303206 atcttgatattctaccattttt-aaatattgtcatttttaaaatagttatagcatgtattttctattataattaataacatacc 16303288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 362 - 567
Target Start/End: Original strand, 32962016 - 32962221
Alignment:
Q  362 agggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaat 461  Q
    ||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| | ||||| |||||||    
T  32962016 agggtgcgtttgatggtcaggatagggagatatgatatgatacattaatcatatcctgcttaaatctcatgtttgatgcaccaatgggatagaataaaat 32962115  T
Q  462 aaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattcctt 561  Q
    |||  ||||  ||||| |||  |||||||||||||| |||| |||| | |||| ||||||||||||||||||||| ||||||||||||| |||||||||     
T  32962116 aaactattttcctatcatatcctgactttcctttgtaatttctatcctgagtacaagctgagttataaattatcctgatgagattagaagatcattcctc 32962215  T
Q  562 atttat 567  Q
    ||||||    
T  32962216 atttat 32962221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 368 - 649
Target Start/End: Original strand, 15268592 - 15268873
Alignment:
Q  368 cgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatca 467  Q
    |||||||||||| ||||| ||||| | |||| |||||||||||||||||||||| |||| ||||||||||| || ||||  |||||||||||||||| ||    
T  15268592 cgtttgatggtcaggataaggagacaggatatgatacattaatcatatcctgctgaaatctcatgtttgatacaacaaatggataggataaaataaacca 15268691  T
Q  468 tttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttat 567  Q
    |||  ||||| |||   ||||||||||||| |||| |||  |||||||| |||| |||| |||||||||  ||| ||||| || ||| ||||||||||||    
T  15268692 ttttcctatcctatcccgactttcctttgtaatttttattctaagtatatgctgggttagaaattatcctaatg-gattaaaagatcgttccttatttat 15268790  T
Q  568 tatcttgatattctgttatttttaaaatattgtc-gtttttaaaataatgatagcatgcattttctattataatcaataacat 649  Q
    ||||||||||||||   |||| ||||||| |||| || |||||||||||||||||||| ||||||||||||||| ||| ||||    
T  15268791 tatcttgatattctaccatttataaaatactgtcagtgtttaaaataatgatagcatgtattttctattataattaatcacat 15268873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 418 - 646
Target Start/End: Original strand, 27696248 - 27696473
Alignment:
Q  418 tgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataa 517  Q
    ||||||||| |||||||||||||||||||  |||| |||||||||||  ||||  ||||||||| |||| |   |||||| ||||||||| |  ||||||    
T  27696248 tgcttaaatctcatgtttgatgcaccaaatggatatgataaaataaactattttcctatcttatcttgatt---ctttgtaatttatatcctgtgtataa 27696344  T
Q  518 gctgagttataaattatccagatgagattagaatatcattccttatttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatga 617  Q
    |||  |||| ||||||||  |||| |||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||    
T  27696345 gctaggttagaaattatcttgatgggattaggagatcattccttatttattatcttgatattctgtcatttttaaaatattgttatttttaaaataatga 27696444  T
Q  618 tagcatgcattttctattataatcaataa 646  Q
    ||||||| ||||||||||||||| |||||    
T  27696445 tagcatgtattttctattataattaataa 27696473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 436 - 649
Target Start/End: Original strand, 40953263 - 40953476
Alignment:
Q  436 gatgcaccaaagtgataggataaaataaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatc 535  Q
    |||||||||||| |||| ||| ||||||||||||| |||||| |||  |||||||||||||| |||| |||| | |||||| |||| |||| |||||||     
T  40953263 gatgcaccaaagagatatgatgaaataaatcatttttctatcatatcctgactttcctttgtaatttttatcctgagtataggctgggttagaaattatt 40953362  T
Q  536 cagatgagattagaatatcattccttatttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctatt 635  Q
       ||| |||||||| |||||||||||||||||| ||||||||||||   |||||||||||||||| |||||||||||||||||||||| ||||| ||||    
T  40953363 ataatgggattagaagatcattccttatttattaccttgatattctgccctttttaaaatattgtcatttttaaaataatgatagcatgtattttttatt 40953462  T
Q  636 ataatcaataacat 649  Q
    ||||| ||||||||    
T  40953463 ataattaataacat 40953476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 456 - 640
Target Start/End: Complemental strand, 11656454 - 11656270
Alignment:
Q  456 taaaataaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatca 555  Q
    ||||||||| ||||| |||||| |||  |||||||||||||| |||| |||| | | |||| | || |||| |||||||||  |||||||||||| ||||    
T  11656454 taaaataaaccatttttctatcctatcctgactttcctttgtaatttctatcctgaatataggttgggttagaaattatcctaatgagattagaagatca 11656355  T
Q  556 ttccttatttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataat 640  Q
    ||||||||||||| |||| |||||||   ||||| ||||||||||| |||||||||||||||||||||| | |||||||||||||    
T  11656354 ttccttatttattgtcttaatattctaccattttgaaaatattgtcatttttaaaataatgatagcatgtaatttctattataat 11656270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 362 - 596
Target Start/End: Original strand, 16456456 - 16456690
Alignment:
Q  362 agggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaat 461  Q
    |||||||||||||||||| ||||| |||||    ||| |||| || |||||||| || ||||||| |||||||||||||||||||| |||| ||||||||    
T  16456456 agggttcgtttgatggtcaggataaggagacgaaatatgatatatcaatcatattctacttaaatatcatgtttgatgcaccaaagagataagataaaat 16456555  T
Q  462 aaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagatt-agaatatcattcct 560  Q
    |||  |||| | |||| |||  ||| || | ||||| |||  |||| | ||||||||||  |||| ||||||||  |||  |||| | ||||| ||| ||    
T  16456556 aaactatttttttatcctatcctgatttgcttttgtaattcttatcttgagtataagctacgttagaaattatcttgataggattaaaaatat-atttct 16456654  T
Q  561 tatttattatcttgatattctgttatttttaaaata 596  Q
    ||||||| ||| ||| ||||||| ||||||||||||    
T  16456655 tatttatgatcatgacattctgtcatttttaaaata 16456690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 400 - 464
Target Start/End: Complemental strand, 11657067 - 11657003
Alignment:
Q  400 gatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaa 464  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||| |||| |||||||||||    
T  11657067 gatacattaatcatatcctgcttaaatctcatgtttgatgtaccaaagggatatgataaaataaa 11657003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 405 - 534
Target Start/End: Complemental strand, 8491176 - 8491048
Alignment:
Q  405 attaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatcttattttgactttcctttgtcatttat 504  Q
    |||||||||||| || |||||| |||| ||||||| | ||||| |||| ||||||||||||||||| ||||||||| | | |||| | ||||| |||| |    
T  8491176 attaatcatatcttgtttaaatatcatatttgatgtatcaaagagatatgataaaataaatcattt-tctatcttactctcacttgcatttgtaattttt 8491078  T
Q  505 atcataagtataagctgagttataaattat 534  Q
    ||| | || ||||| ||||||| |||||||    
T  8491077 atcttgagaataagttgagttagaaattat 8491048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 361 - 424
Target Start/End: Original strand, 42180461 - 42180524
Alignment:
Q  361 aagggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaa 424  Q
    |||||| |||||||||||| ||||||||||| |  ||| |||||||||||||||||| ||||||    
T  42180461 aagggtgcgtttgatggtcaggatagggagacagaatatgatacattaatcatatccagcttaa 42180524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 401 - 446
Target Start/End: Original strand, 511650 - 511695
Alignment:
Q  401 atacattaatcatatcctgcttaaatttcatgtttgatgcaccaaa 446  Q
    ||||||| || ||||||||||| |||||||||||||||||||||||    
T  511650 atacatttattatatcctgcttgaatttcatgtttgatgcaccaaa 511695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 718 - 754
Target Start/End: Original strand, 3174233 - 3174269
Alignment:
Q  718 gttatcatgtgcgcatcaaacacatgataggattaat 754  Q
    |||||||||| ||||||||||||||||||||||||||    
T  3174233 gttatcatgtacgcatcaaacacatgataggattaat 3174269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 718 - 754
Target Start/End: Original strand, 40953545 - 40953581
Alignment:
Q  718 gttatcatgtgcgcatcaaacacatgataggattaat 754  Q
    ||||||||||||||||||||||||||||| |||||||    
T  40953545 gttatcatgtgcgcatcaaacacatgatatgattaat 40953581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 719 - 750
Target Start/End: Original strand, 23586059 - 23586090
Alignment:
Q  719 ttatcatgtgcgcatcaaacacatgataggat 750  Q
    ||||||||||||||||||||||||||||||||    
T  23586059 ttatcatgtgcgcatcaaacacatgataggat 23586090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 532 - 579
Target Start/End: Complemental strand, 35010734 - 35010687
Alignment:
Q  532 tatccagatgagattagaatatcattccttatttattatcttgatatt 579  Q
    ||||| |||||||||| || ||||||||||||||||||||||| ||||    
T  35010734 tatcccgatgagattaaaagatcattccttatttattatcttgctatt 35010687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 138; Significance: 1e-71; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 360 - 649
Target Start/End: Complemental strand, 28457982 - 28457698
Alignment:
Q  360 caagggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaa 459  Q
    ||||||| |||||||||||| ||||||||||| | |||| ||||||||||||||||||||||||||| |  |||||||||||||||||||||| ||||||    
T  28457982 caagggtccgtttgatggtcaggatagggagacaggatatgatacattaatcatatcctgcttaaatcttgtgtttgatgcaccaaagtgatatgataaa 28457883  T
Q  460 ataaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattcc 559  Q
    ||||| ||||| ||||||||||    |||||||||||| |||| |||| | ||      ||| |||| || |||||| |||| |||||||| ||||||||    
T  28457882 ataaaccatttttctatcttatcccaactttcctttgtaatttctatcctgag-----actgggttagaagttatcctgatgggattagaagatcattcc 28457788  T
Q  560 ttatttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacat 649  Q
    |||||||||||||||||||  ||  ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||    
T  28457787 ttatttattatcttgatatattgccatttttaaaatattgtcatttttaaaataatgatagcatgcattttctattataattactaacat 28457698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 125; E-Value: 7e-64
Query Start/End: Original strand, 361 - 649
Target Start/End: Complemental strand, 40701228 - 40700941
Alignment:
Q  361 aagggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaa 460  Q
    |||||| |||||||||||| ||||||  ||| | |||| ||||||||||||||||||||||||||| ||||||||||||| |||||   ||| |||||||    
T  40701228 aagggtccgtttgatggtcaggatagaaagacaggatatgatacattaatcatatcctgcttaaatctcatgtttgatgctccaaaagtatatgataaaa 40701129  T
Q  461 taaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattcct 560  Q
    |||| ||||| ||| || |||  |||||||||||||| |||| |||| | ||||||||||| |||| ||||||||| |||  ||||| || |||||||||    
T  40701128 taaaccatttttctgtcatatcctgactttcctttgtaatttttatcctgagtataagctgtgttagaaattatcctgataggattataagatcattcct 40701029  T
Q  561 tatttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacat 649  Q
    ||||||| ||||||||||| ||  ||||| |||||||||||  ||||||| ||||||||||||| ||||||||||||||| ||||||||    
T  40701028 tatttatcatcttgatattatgacattttaaaaatattgtc-attttaaattaatgatagcatgtattttctattataattaataacat 40700941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 387 - 596
Target Start/End: Complemental strand, 21748571 - 21748362
Alignment:
Q  387 ggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatcttattttga 486  Q
    ||||| |||||| |||||||||||||||| |||||||||| ||||||||||||||||||| ||||| |||||||| || |||||  ||||| |||| |||    
T  21748571 ggagacatgatatgatacattaatcatattctgcttaaatctcatgtttgatgcaccaaaatgatatgataaaattaaccattttcctatcctattatga 21748472  T
Q  487 ctttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttattatcttgatattctgttat 586  Q
     |||||||||| |||| |||| |||||||| |||| |||| ||||||||| ||||||||||||| | |||||||||||||||||||||||||||||  ||    
T  21748471 ttttcctttgtaatttctatcctaagtataggctgggttaaaaattatcctgatgagattagaagaccattccttatttattatcttgatattctgccat 21748372  T
Q  587 ttttaaaata 596  Q
    ||||||||||    
T  21748371 ttttaaaata 21748362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 362 - 568
Target Start/End: Original strand, 33072584 - 33072790
Alignment:
Q  362 agggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaat 461  Q
    ||||| |||||||| ||| ||||||||||| |  ||| |||||||||||||||||||  ||||||||||||||||||||||| |||  ||| ||||||||    
T  33072584 agggtgcgtttgatagtcaggatagggagacaaaatatgatacattaatcatatcctatttaaatttcatgtttgatgcacctaaggaatatgataaaat 33072683  T
Q  462 aaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattcctt 561  Q
    ||| |||||  ||||| |||  | | |||||||||| |||| |||| | |||||| |||  |||| ||||||||  |||  ||||| || ||||||||||    
T  33072684 aaaccattttcctatcatatcctaagtttcctttgtaatttctatcctgagtataggctaggttagaaattatcatgataggattataagatcattcctt 33072783  T
Q  562 atttatt 568  Q
    |||||||    
T  33072784 atttatt 33072790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 368 - 516
Target Start/End: Complemental strand, 7818611 - 7818464
Alignment:
Q  368 cgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatca 467  Q
    ||||||||||||  |||||||| |||||||| |||||||||||||||| |||||||||| ||||||||||| ||| |||| ||||| |||||||||| ||    
T  7818611 cgtttgatggtcaagatagggatatatgatatgatacattaatcatattctgcttaaatctcatgtttgatacactaaagagatagaataaaataaa-ca 7818513  T
Q  468 tttctctatcttattttgactttcctttgtcatttatatcataagtata 516  Q
    |||  ||||| |||| | |||||||||||| |||| |||| ||| ||||    
T  7818512 ttttactatcctattctaactttcctttgtaatttctatcctaaatata 7818464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 368 - 594
Target Start/End: Complemental strand, 45853299 - 45853075
Alignment:
Q  368 cgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatca 467  Q
    |||||||||||| |||  |||||| |  ||| ||||||||||| ||||||| ||||||| || | |||| ||||||||||  |||  |||||||||| ||    
T  45853299 cgtttgatggtcagga--gggagacagaatatgatacattaattatatccttcttaaatctcttatttgctgcaccaaagatatataataaaataaacca 45853202  T
Q  468 tttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttat 567  Q
    |||   | || |||| ||||||||| |||| |||| |||| | |||||| |||| |||||||  ||||  |||  ||||| |||||||||||||||||||    
T  45853201 ttttcttttcctattatgactttccattgtaatttttatcgtgagtataggctgggttataatctatcttgattggattaaaatatcattccttatttat 45853102  T
Q  568 tatcttgatattctgttatttttaaaa 594  Q
    |||| ||||||||||| ||||||||||    
T  45853101 tatcgtgatattctgtcatttttaaaa 45853075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 369 - 495
Target Start/End: Original strand, 21495053 - 21495178
Alignment:
Q  369 gtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcat 468  Q
    |||||||| ||  |||||||||| |||||| |||| |||||||||||| || |||||| ||||||||||||||||||| |||||||||||||||||  ||    
T  21495053 gtttgatgatcacgatagggagacatgatatgatatattaatcatatcttg-ttaaatctcatgtttgatgcaccaaattgataggataaaataaacgat 21495151  T
Q  469 ttctctatcttattttgactttccttt 495  Q
    || |||||| ||| ||| |||||||||    
T  21495152 ttttctatcatatcttggctttccttt 21495178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 562 - 640
Target Start/End: Complemental strand, 4385035 - 4384957
Alignment:
Q  562 atttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataat 640  Q
    |||||||||| ||||||| ||||||||||||||| ||||| ||||||||||||||||| |||| ||||  |||||||||    
T  4385035 atttattatcatgatattatgttatttttaaaatgttgtcatttttaaaataatgatatcatgtatttgatattataat 4384957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 550 - 596
Target Start/End: Original strand, 21495222 - 21495268
Alignment:
Q  550 atatcattccttatttattatcttgatattctgttatttttaaaata 596  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||    
T  21495222 atatcattccttatttattatcatgatattctgtcatttttaaaata 21495268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 361 - 457
Target Start/End: Original strand, 46663163 - 46663259
Alignment:
Q  361 aagggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggata 457  Q
    ||||| ||||| ||||||| ||||| ||||| |  ||| |||||||| |||||||| || |||||| |||| ||||||||||||||  |||||||||    
T  46663163 aaggggtcgttagatggtcgggataaggagacaatatatgatacatttatcatatcatgtttaaatctcatatttgatgcaccaaacagataggata 46663259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 412 - 452
Target Start/End: Original strand, 27488469 - 27488509
Alignment:
Q  412 atatcctgcttaaatttcatgtttgatgcaccaaagtgata 452  Q
    |||||||| ||||||||||||||||||||||||||| ||||    
T  27488469 atatcctggttaaatttcatgtttgatgcaccaaagagata 27488509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 718 - 754
Target Start/End: Complemental strand, 40700872 - 40700836
Alignment:
Q  718 gttatcatgtgcgcatcaaacacatgataggattaat 754  Q
    ||||||||||| |||||||||||||||||||||||||    
T  40700872 gttatcatgtgtgcatcaaacacatgataggattaat 40700836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 367 - 470
Target Start/End: Complemental strand, 41865906 - 41865803
Alignment:
Q  367 tcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatc 466  Q
    |||||||||||   ||||||||||||| |||| |||| | | ||||||||| |||||||| |||| |||||| ||  |||| ||||  ||| ||||||||    
T  41865906 tcgtttgatggcaaggatagggagataagatatgataaaattatcatatcccgcttaaatctcatatttgattcataaaagggatataatataataaatc 41865807  T
Q  467 attt 470  Q
    ||||    
T  41865806 attt 41865803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 718 - 751
Target Start/End: Complemental strand, 28457629 - 28457596
Alignment:
Q  718 gttatcatgtgcgcatcaaacacatgataggatt 751  Q
    |||||||||||||||||||||| |||||||||||    
T  28457629 gttatcatgtgcgcatcaaacatatgataggatt 28457596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 718 - 754
Target Start/End: Complemental strand, 54819705 - 54819668
Alignment:
Q  718 gttatcatgtgcg-catcaaacacatgataggattaat 754  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  54819705 gttatcatgtgcgacatcaaacacatgataggattaat 54819668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 136; Significance: 2e-70; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 365 - 652
Target Start/End: Original strand, 23404450 - 23404736
Alignment:
Q  365 gttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaa 464  Q
    ||||| ||||||| | ||||||||||| |||||| ||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  23404450 gttcgattgatggccaggatagggagacatgatatgatacattaataatatcctgcataaatttcatgtttgatgcaccaaagagataggataaaataaa 23404549  T
Q  465 tcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatt 564  Q
     ||||||  |||| |||  |||||||||||||| ||||||||| | |||||| ||| ||||| ||||||||| |||    ||| || || |||||| |||    
T  23404550 ccatttccatatcatatcctgactttcctttgtaatttatatcttgagtataggctaagttagaaattatcctgattgacttaaaagattattcctaatt 23404649  T
Q  565 tattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacatacc 652  Q
    ||||||||||||||||||  |||||| |||||||||| ||||||||||| | |||||||| ||||||||||||||| |||||||||||    
T  23404650 tattatcttgatattctgccattttt-aaatattgtcatttttaaaatagttatagcatgtattttctattataattaataacatacc 23404736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 400 - 646
Target Start/End: Original strand, 9314806 - 9315051
Alignment:
Q  400 gatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatcttattttgactttcctttgtca 499  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||| |||| |||||  ||||| |||  |||||||||||||| |    
T  9314806 gatacattaatcatatcctgcttaaatctcatgtttgatgcaccaaatggataggataaa-taaaccattttcctatcctatcctgactttcctttgtaa 9314904  T
Q  500 tttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttattatcttgatattctgttatttttaaaatattg 599  Q
    |||  ||| | |||||| ||||| ||| ||||||||| | ||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||      
T  9314905 tttcaatcctgagtataggctgaattagaaattatcctggtgagattagaagatcattccttatttattatcttgatattctgccatttttaaaatatca 9315004  T
Q  600 tcgtttttaaaataatgatagcatgcattttctattataatcaataa 646  Q
    || |||||||||||||||||||||| ||||||||||||||| |||||    
T  9315005 tcatttttaaaataatgatagcatgtattttctattataattaataa 9315051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 130; E-Value: 7e-67
Query Start/End: Original strand, 361 - 630
Target Start/End: Original strand, 12255070 - 12255339
Alignment:
Q  361 aagggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaa 460  Q
    |||||| |||||||||||| ||||||||||| |  ||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||    
T  12255070 aagggtgcgtttgatggtcaggatagggagacagaatatgatacattaatcatatcctgcttaaatctcatgtttgatgcaccaaagggatgggataaaa 12255169  T
Q  461 taaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattcct 560  Q
    |||| |||||  ||||| |||| || ||||||||||| |||| ||   | |||||| |||| |||| ||||||||  |||| |||||||| || ||||||    
T  12255170 taaaccattttcctatcctattctgtctttcctttgtaatttctaatctgagtataggctgggttaaaaattatcatgatgggattagaagataattcct 12255269  T
Q  561 tatttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcatttt 630  Q
    |||||||||||||||||||||||  |||||||||||||||   ||||||||||||||||||||| |||||    
T  12255270 tatttattatcttgatattctgtcctttttaaaatattgttacttttaaaataatgatagcatgtatttt 12255339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 369 - 649
Target Start/End: Complemental strand, 10789618 - 10789337
Alignment:
Q  369 gtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaa-taaatca 467  Q
    ||||||||||| |||||  |||| |  ||| |||||||||||||||| ||||||||||||||| |||||||||| | || |||| ||||||| |||| ||    
T  10789618 gtttgatggtcaggataaagagacagaatatgatacattaatcatattctgcttaaatttcatatttgatgcacgagagagataagataaaaataaacca 10789519  T
Q  468 tttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttat 567  Q
    |||   ||| ||||  ||| |||||||||| |||| ||||   |||||| | || |||||||||||| | |||| ||||| |||||||||||||||||||    
T  10789518 ttttcttattttatcctgattttcctttgtaatttctatccagagtataggttgggttataaattattctgatgggattataatatcattccttatttat 10789419  T
Q  568 tatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacat 649  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||| ||||||||    
T  10789418 tatcttgatattctgctatttttaaaatattgtcatttttaaaataataatagcatgtattttctattataattaataacat 10789337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 362 - 649
Target Start/End: Complemental strand, 29979597 - 29979314
Alignment:
Q  362 agggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaat 461  Q
    ||||| |||||||||||| |||| |||||| | || | ||||||||||||||||| || |||||| |||||||||||||||||||| |||| ||||||||    
T  29979597 agggtccgtttgatggtcaggatcgggagaca-gaaatgatacattaatcatatcatgtttaaatctcatgtttgatgcaccaaagggatatgataaaat 29979499  T
Q  462 aaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattcctt 561  Q
    ||| |||||  ||||| |||| ||| |||||||||| |||| |||| | ||||   |||| |||| ||||||| |   |||||||| || ||||||||||    
T  29979498 aaaccattttcctatcatattatgattttcctttgtaatttctatcctgagtaccggctgggttagaaattattc---tgagattaaaagatcattcctt 29979402  T
Q  562 atttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacat 649  Q
    ||||||||||||||||||||   ||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||| ||||||||    
T  29979401 atttattatcttgatattctaccatttttaaaatattgtcatttttaaaataatgatagcatgtattttctatcataattaataacat 29979314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 368 - 652
Target Start/End: Original strand, 32329317 - 32329590
Alignment:
Q  368 cgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatca 467  Q
    |||||||||||| ||||||||||  |  ||| |||||||||||| ||| ||| ||||||  ||||||||||||||||||| |||| ||||||||||| ||    
T  32329317 cgtttgatggtcaggatagggaggcagaatatgatacattaatcgtattctgtttaaatcgcatgtttgatgcaccaaag-gatatgataaaataaacca 32329415  T
Q  468 tttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttat 567  Q
    |||   ||||||||  |||||||||||||| ||||||||| | | |||| |||| |||| |||||||          |||||| ||||||||||||||||    
T  32329416 ttttcatatcttatcctgactttcctttgtaatttatatcctgaatatatgctgggttagaaattat----------ttagaagatcattccttatttat 32329505  T
Q  568 tatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacatacc 652  Q
    ||| ||||||||||   ||||| ||||||||||| |||||||||| ||||||||||| ||||||||||||||| |||||||||||    
T  32329506 tatgttgatattctaccattttgaaaatattgtcatttttaaaatgatgatagcatgtattttctattataattaataacatacc 32329590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 419 - 619
Target Start/End: Complemental strand, 24660938 - 24660738
Alignment:
Q  419 gcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatcttattttgacttt-cctttgtcatttatatcataagtataa 517  Q
    |||||||| |||| |||||| |||||||| |||| |||||| |||| ||||| |||||  ||| |||  ||| ||||||| |||| |||| | |||||||    
T  24660938 gcttaaatctcatatttgatacaccaaagagatatgataaattaaaccatttttctatactatcttggtttttcctttgtaatttgtatcctgagtataa 24660839  T
Q  518 gctgagttataaattatccagatgagattagaatatcattccttatttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatga 617  Q
    |||||||||  || ||||| ||   |||||||| || || |||||||||||||| ||||||||| | ||||||||||| ||||| |||||||||||||||    
T  24660838 gctgagttaggaactatcctgaaaggattagaaaat-ataccttatttattatcatgatattctatcatttttaaaatgttgtcatttttaaaataatga 24660740  T
Q  618 ta 619  Q
    ||    
T  24660739 ta 24660738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 543 - 596
Target Start/End: Complemental strand, 391289 - 391236
Alignment:
Q  543 gattagaatatcattccttatttattatcttgatattctgttatttttaaaata 596  Q
    |||||||| |||||||||||||||||||||||||||| ||  ||||||||||||    
T  391289 gattagaagatcattccttatttattatcttgatattttgccatttttaaaata 391236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 370 - 467
Target Start/End: Original strand, 12267316 - 12267413
Alignment:
Q  370 tttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatca 467  Q
    |||||| ||| | ||| ||||| ||||||  ||| |||||| |||||||| |||||||| |||||||||||||||||  |||| ||| ||||||||||    
T  12267316 tttgattgtcagaatatggagacatgatattatatattaattatatcctgtttaaattttatgtttgatgcaccaaacagatatgatgaaataaatca 12267413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 718 - 754
Target Start/End: Original strand, 9315123 - 9315159
Alignment:
Q  718 gttatcatgtgcgcatcaaacacatgataggattaat 754  Q
    |||||||||||||||||||||||||||||||||||||    
T  9315123 gttatcatgtgcgcatcaaacacatgataggattaat 9315159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 603 - 649
Target Start/End: Complemental strand, 391246 - 391200
Alignment:
Q  603 tttttaaaataatgatagcatgcattttctattataatcaataacat 649  Q
    ||||||||||||| |||||||| ||||||||||||||| ||||||||    
T  391246 tttttaaaataattatagcatgtattttctattataattaataacat 391200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 718 - 754
Target Start/End: Original strand, 12255428 - 12255464
Alignment:
Q  718 gttatcatgtgcgcatcaaacacatgataggattaat 754  Q
    ||||||||||||||||||||||||||||| |||||||    
T  12255428 gttatcatgtgcgcatcaaacacatgataagattaat 12255464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 133; Significance: 1e-68; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 368 - 649
Target Start/End: Complemental strand, 18503274 - 18502991
Alignment:
Q  368 cgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatca 467  Q
    ||||||||||||  ||||| |||||  |||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||    
T  18503274 cgtttgatggtcatgatagagagatcggatatgatacattaatcatatcctgcttaaatatcatgtttgatgcaccaaagagataggataaaataaacca 18503175  T
Q  468 tttctctatcttattttgactttcctttgtcatttatatcataagtataa--gctgagttataaattatccagatgagattagaatatcattccttattt 565  Q
    |||  ||||| |||  ||| |||| ||||| |||| |||| | ||||||   |||| |||| ||||||| | |||| |||||||| ||||||| |||||     
T  18503174 ttttcctatcctatcctgattttcatttgtaatttctatcttgagtatataggctgtgttagaaattatgctgatgggattagaagatcattctttatta 18503075  T
Q  566 attatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacat 649  Q
    |||||||||||||||||  |||||| |||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||    
T  18503074 attatcttgatattctgccatttttgaaatattgtcatttttaaaataatgatagcatgtattttctattataattaataacat 18502991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 369 - 650
Target Start/End: Complemental strand, 15673149 - 15672876
Alignment:
Q  369 gtttgatggtccggatagggagatatgatacgatacattaatcatat--cctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatc 466  Q
    |||||||||||  |||||||||  | |||| ||||||||||||||||  ||||||||||| |||||||||||||||||||| |||||||||||||||| |    
T  15673149 gtttgatggtcaagatagggaggcaggatatgatacattaatcatatatcctgcttaaatctcatgtttgatgcaccaaagagataggataaaataaacc 15673050  T
Q  467 atttctctatcttattttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttattta 566  Q
    ||||  ||||| |||  |||||||||||||  ||||||||       ||| |||| |||| |||||||||   ||||||||||| |||||||||||||||    
T  15673049 attttcctatcatatcctgactttcctttgcaatttatat-------ataggctgggttagaaattatcc---tgagattagaagatcattccttattta 15672960  T
Q  567 ttatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacata 650  Q
    |||||||||||||||   ||||| ||||||||||  |||||||||||||||||||||| ||||||||||||||| |||||||||    
T  15672959 ttatcttgatattctaacattttgaaaatattgttatttttaaaataatgatagcatgtattttctattataattaataacata 15672876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 400 - 652
Target Start/End: Original strand, 34703033 - 34703288
Alignment:
Q  400 gatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatcttattttgactttcctttgtca 499  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||   ||| |||||||||||  ||||  ||||| |||  |||||||||||||| |    
T  34703033 gatacattaatcatatcctgcttaaatcacatgtttgatgcaccaaaagtatatgataaaataaactattttcctatcatatcctgactttcctttgtaa 34703132  T
Q  500 tttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttattatc-ttgatattctgttatttttaaaatatt 598  Q
    |||||||||| || ||| | || |||| ||| ||||| |||| |||||||| |||||||||||||||||||| ||||||||||  |||||| ||||||||    
T  34703133 tttatatcatgaggataggttgggttagaaactatcctgatgggattagaagatcattccttatttattatctttgatattctactattttgaaaatatt 34703232  T
Q  599 gtcgtttttaaaataatgatagc--atgcattttctattataatcaataacatacc 652  Q
    ||| |||||||||||||||||||  ||| ||||||||||||||| |||| ||||||    
T  34703233 gtcatttttaaaataatgatagcatatgtattttctattataattaatagcatacc 34703288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 421 - 522
Target Start/End: Original strand, 6110160 - 6110261
Alignment:
Q  421 ttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatcttattttgactttcctttgtcatttatatcataagtataagct 520  Q
    |||||| |||||||||||||| ||||| |||| ||||||||||||||||| |||||| ||| || |||||||||||| ||||||||| | ||||||||||    
T  6110160 ttaaatctcatgtttgatgcatcaaagggataagataaaataaatcatttttctatcctatcttaactttcctttgtaatttatatcctgagtataagct 6110259  T
Q  521 ga 522  Q
    ||    
T  6110260 ga 6110261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 560 - 649
Target Start/End: Complemental strand, 34866447 - 34866358
Alignment:
Q  560 ttatttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataatgatagcatgcattttctattataatcaataacat 649  Q
    ||||||||||| |||||||||||  ||||||| ||||||||  |||||||||||||||| ||||| ||||||||||||||| ||||||||    
T  34866447 ttatttattatattgatattctgccatttttataatattgttatttttaaaataatgattgcatgtattttctattataattaataacat 34866358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 383 - 581
Target Start/End: Complemental strand, 3480908 - 3480709
Alignment:
Q  383 atagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggata-aaataaatcatttctctatcttat 481  Q
    |||| ||||||||||| |||| |||||||||||| ||| ||||| |||||||| ||||| || |||||||  ||| |||||||||||||  |||||||||    
T  3480908 atagagagatatgatatgatatattaatcatatcatgcataaatctcatgtttaatgcatcatagtgataatatagaaataaatcattttcctatcttat 3480809  T
Q  482 tttgactttcctttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttattatcttgatattct 581  Q
      ||| || || |||| |||| |||| | || |||| ||  |||| ||  ||||  ||||||||||| |  ||||||||||||||||||| | |||||||    
T  3480808 cgtgatttgccattgtaatttttatcttgagcataaactatgttagaatctatcttgatgagattagcaattcattccttatttattatcataatattct 3480709  T

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Target: chr7; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 366 - 487
Target Start/End: Complemental strand, 32585946 - 32585825
Alignment:
Q  366 ttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaat 465  Q
    |||||||||||| |  |||||||||  |  ||| ||||||  |||||||||||| |||||| |||||||||||||| |||| ||||| ||||||||||||    
T  32585946 ttcgtttgatggccacgatagggaggcaaaatatgatacaagaatcatatcctgtttaaatctcatgtttgatgcaacaaaatgatatgataaaataaat 32585847  T
Q  466 catttctctatcttattttgac 487  Q
     ||||  |||||||||| ||||    
T  32585846 aattttcctatcttattctgac 32585825  T

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Target: chr7; HSP #8
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 368 - 470
Target Start/End: Original strand, 25102600 - 25102707
Alignment:
Q  368 cgtttgatggtccggatagggaga-----tatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaata 462  Q
    |||||||||||| |||||||||||     ||||||| |||| ||| |||| || || ||||||| |||||||||||||||||||  ||||||||||||||    
T  25102600 cgtttgatggtcgggatagggagacatgatatgatatgatatatttatcacattctacttaaatctcatgtttgatgcaccaaatagataggataaaata 25102699  T
Q  463 aatcattt 470  Q
    ||| ||||    
T  25102700 aattattt 25102707  T

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Target: chr7; HSP #9
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 393 - 619
Target Start/End: Original strand, 28428933 - 28429160
Alignment:
Q  393 atgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatcttattttgactttcc 492  Q
    |||||| |||| ||| |||| ||| || |||||| | |||||| |||||||||||  |||||||||||||||| ||||    |||||||  | ||||  |    
T  28428933 atgatatgataaatttatcacatcatgtttaaatcttatgtttaatgcaccaaagaaataggataaaataaattattttgtaatcttatcctaacttatc 28429032  T
Q  493 tttgtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttattatcttgatattctgttatttttaa 592  Q
    ||||| ||||||||  ||| |||| | |  |||  |||||||||  ||  ||||| ||  |||||||||| |||||||| ||||||||||  ||||||||    
T  28429033 tttgtaatttatattttaaatatatgttaggtttgaaattatcctaataggattataaattcattccttagttattatcatgatattctgccatttttaa 28429132  T
Q  593 aata-ttgtcgtttttaaaataatgata 619  Q
    |||| || || |||||||||||||||||    
T  28429133 aatatttctcatttttaaaataatgata 28429160  T

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Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 362 - 464
Target Start/End: Complemental strand, 24429450 - 24429348
Alignment:
Q  362 agggttcgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaat 461  Q
    |||||| ||||||||||| |||||| ||| || |||| || | ||  ||||||||||| ||||||  |||||||||||||| |||| |||||||||||||    
T  24429450 agggtttgtttgatggtcaggatagagagttaagatatgacatatctatcatatcctgtttaaatcacatgtttgatgcactaaagggataggataaaat 24429351  T
Q  462 aaa 464  Q
    |||    
T  24429350 aaa 24429348  T

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Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 552 - 596
Target Start/End: Original strand, 6110261 - 6110305
Alignment:
Q  552 atcattccttatttattatcttgatattctgttatttttaaaata 596  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  6110261 atcattccttatttattatcttgatattctgtcatttttaaaata 6110305  T

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Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 547 - 613
Target Start/End: Complemental strand, 17508733 - 17508667
Alignment:
Q  547 agaatatcattccttatttattatcttgatattctgttatttttaaaatattgtcgtttttaaaata 613  Q
    |||| |||||||||||||||||||| |||| |||||  ||||||||||| ||||| |||||| ||||    
T  17508733 agaagatcattccttatttattatcatgatgttctgccatttttaaaatgttgtcatttttataata 17508667  T

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Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 547 - 613
Target Start/End: Original strand, 17544481 - 17544547
Alignment:
Q  547 agaatatcattccttatttattatcttgatattctgttatttttaaaatattgtcgtttttaaaata 613  Q
    |||| |||||||||||||||||||| |||| |||||  ||||||||||| ||||| |||||| ||||    
T  17544481 agaagatcattccttatttattatcatgatgttctgccatttttaaaatgttgtcatttttataata 17544547  T

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Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 388 - 477
Target Start/End: Complemental strand, 15524351 - 15524263
Alignment:
Q  388 gagatatgatacgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatc 477  Q
    |||||| |||| |||| |||||||||||| |  |||||| ||||||||| ||||||| ||||| ||||| ||||||| ||||| ||||||    
T  15524351 gagataagatatgatatattaatcatatcttatttaaatctcatgtttggtgcaccagagtgagaggat-aaataaaccatttttctatc 15524263  T

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Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 543 - 600
Target Start/End: Complemental strand, 31804816 - 31804759
Alignment:
Q  543 gattagaatatcattccttatttattatcttgatattctgttatttttaaaatattgt 600  Q
    ||||||||  ||||||||||||||||||| ||||||| ||| ||||||||||| ||||    
T  31804816 gattagaaattcattccttatttattatcctgatattatgtcatttttaaaatgttgt 31804759  T

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Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 718 - 754
Target Start/End: Complemental strand, 34866289 - 34866253
Alignment:
Q  718 gttatcatgtgcgcatcaaacacatgataggattaat 754  Q
    ||||||||||||||||||||||||||||| |||||||    
T  34866289 gttatcatgtgcgcatcaaacacatgataagattaat 34866253  T

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Target: scaffold0702 (Bit Score: 49; Significance: 2e-18; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 409 - 601
Target Start/End: Complemental strand, 4127 - 3936
Alignment:
Q  409 atcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatcttattttgactttcctttgtcatttatatca 508  Q
    ||||||||| |||||||| |||||||||||||||||||| | | ||||||||||||  ||||  |||||||||  | ||||  |||||| |||| ||||     
T  4127 atcatatccggcttaaatatcatgtttgatgcaccaaagaggt-ggataaaataaactatttacctatcttatcctaacttatctttgtaatttttatct 4029  T
Q  509 taagtataagctgagttataaattatccagatgagattagaatatcattccttatttattatcttgatattctgttatttttaaaatattgtc 601  Q
    |||||||||| ||||||  ||| ||||  |||  ||||| ||  ||||||||| ||||||| | ||||||| | |  ||||||||||||||||    
T  4028 taagtataagatgagttggaaactatcatgataggattacaaattcattccttctttattaccatgatattatatcgtttttaaaatattgtc 3936  T

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Target: scaffold0662 (Bit Score: 49; Significance: 2e-18; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 409 - 601
Target Start/End: Original strand, 3975 - 4166
Alignment:
Q  409 atcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatcttattttgactttcctttgtcatttatatca 508  Q
    ||||||||| |||||||| |||||||||||||||||||| | | ||||||||||||  ||||  |||||||||  | ||||  |||||| |||| ||||     
T  3975 atcatatccggcttaaatatcatgtttgatgcaccaaagaggt-ggataaaataaactatttacctatcttatcctaacttatctttgtaatttttatct 4073  T
Q  509 taagtataagctgagttataaattatccagatgagattagaatatcattccttatttattatcttgatattctgttatttttaaaatattgtc 601  Q
    |||||||||| ||||||  ||| ||||  |||  ||||| ||  ||||||||| ||||||| | ||||||| | |  ||||||||||||||||    
T  4074 taagtataagatgagttggaaactatcatgataggattacaaattcattccttctttattaccatgatattatatcgtttttaaaatattgtc 4166  T

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Target: scaffold0817 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0817
Description:

Target: scaffold0817; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 368 - 429
Target Start/End: Complemental strand, 62 - 1
Alignment:
Q  368 cgtttgatggtccggatagggagatatgatacgatacattaatcatatcctgcttaaatttc 429  Q
    |||||||||| | ||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  62 cgtttgatggccaggatagggagacatgatatgatacattaatcatattctgcttaaatttc 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0957 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 2)
Name: scaffold0957
Description:

Target: scaffold0957; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 405 - 481
Target Start/End: Original strand, 1659 - 1735
Alignment:
Q  405 attaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatcttat 481  Q
    |||||||||||| |  |||||| | ||||||| |||||||||| |||||||| ||||||||||||| ||||||||||    
T  1659 attaatcatatcttatttaaatcttatgtttggtgcaccaaagagataggatgaaataaatcatttttctatcttat 1735  T

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Target: scaffold0957; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 560 - 615
Target Start/End: Original strand, 1816 - 1871
Alignment:
Q  560 ttatttattatcttgatattctgttatttttaaaatattgtcgtttttaaaataat 615  Q
    ||||||||| || ||||||||| | ||||||||||| ||||| |||||||||||||    
T  1816 ttatttattttcatgatattctatcatttttaaaattttgtcatttttaaaataat 1871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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