View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8604_low_10 (Length: 254)
Name: NF8604_low_10
Description: NF8604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8604_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 47057189 - 47057415
Alignment:
| Q |
18 |
ttctcattgccgcgtccccatttattttccttccttttatatttcttgatctcaatgttaaatagccatttgggtttccgaaaagaatcaaacaaacaca |
117 |
Q |
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| T |
47057189 |
ttctcattgccgcgtccccatttattttccttccttttatatttcttgatctcaatgttaaatagccatttaggtttccgaaaagaatcaaacaaacaca |
47057288 |
T |
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| Q |
118 |
aacggtgttttgaggttgaaatctttctctcatataacaaaaatggctatcactgcgtctactccccattccaatgccacaaaaatcaaacactggttgt |
217 |
Q |
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| T |
47057289 |
aacagtgttttgagattgaaatctttctctcatataacaaaaatggctatcactgcgtctactccccattccaatgccacaaaaatcaaacactggttgt |
47057388 |
T |
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| Q |
218 |
ggcatacaaacagtcaggtaaaactta |
244 |
Q |
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| T |
47057389 |
ggcatacagacagtcaggtaaaactta |
47057415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 26920720 - 26920796
Alignment:
| Q |
18 |
ttctcattgccgcgtccccatttattttccttccttttatatttcttgatctcaatgttaaatagcca-tttgggtt |
93 |
Q |
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| T |
26920720 |
ttctcattgacgcgtccccatttatttgcttaccttatatatttcttgagctcaacgttaaatacccactttgggtt |
26920796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 26970320 - 26970383
Alignment:
| Q |
18 |
ttctcattgccgcgtccccatttattttccttccttttatatttcttgatctcaatgttaaata |
81 |
Q |
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||||||||| |||||||||||||||||| | |||| |||||||||||| ||||| |||||||| |
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| T |
26970320 |
ttctcattgatgcgtccccatttattttcttaccttatatatttcttgagctcaacgttaaata |
26970383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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