View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8604_low_11 (Length: 241)

Name: NF8604_low_11
Description: NF8604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8604_low_11
NF8604_low_11
[»] chr7 (3 HSPs)
chr7 (46-241)||(25241828-25242023)
chr7 (15-73)||(4161288-4161346)
chr7 (20-76)||(22760860-22760916)
[»] chr8 (2 HSPs)
chr8 (21-73)||(5801047-5801099)
chr8 (20-77)||(23361672-23361729)
[»] chr6 (2 HSPs)
chr6 (20-75)||(30127398-30127453)
chr6 (20-73)||(33549104-33549157)
[»] chr2 (1 HSPs)
chr2 (20-75)||(18825339-18825394)
[»] chr1 (3 HSPs)
chr1 (20-75)||(51703777-51703832)
chr1 (20-74)||(11068866-11068920)
chr1 (20-73)||(19528350-19528403)
[»] scaffold0361 (1 HSPs)
scaffold0361 (20-73)||(5233-5286)
[»] scaffold0258 (1 HSPs)
scaffold0258 (20-73)||(15346-15399)
[»] chr5 (2 HSPs)
chr5 (20-77)||(14495828-14495885)
chr5 (20-73)||(34984806-34984859)
[»] chr4 (3 HSPs)
chr4 (20-77)||(37443698-37443755)
chr4 (20-73)||(39509070-39509123)
chr4 (21-73)||(51250546-51250598)
[»] chr3 (2 HSPs)
chr3 (20-73)||(2597243-2597296)
chr3 (20-73)||(36720381-36720434)


Alignment Details
Target: chr7 (Bit Score: 172; Significance: 1e-92; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 46 - 241
Target Start/End: Complemental strand, 25242023 - 25241828
Alignment:
Q  46 attaccaccagattaacccaagtgggttaatatgtttaaaattttaaattaagttaaatgaatatgatgcagttttgaatattttataacactatttagg 145  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  25242023 attaccaccagatcaacccaagtggattaatatgtttaaaattttaaattaagttagatgaatatgatgcagttttgaatattttataacactatttagg 25241924  T
Q  146 tatttctttttgaatgtaaagaaccacagtcacagatgatgtatagtgtcattctaacattatttttatgatatttattatgataattatgattgt 241  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25241923 tatttctctttgaatgtaaagaaccacagtcacagataatgtataatgtcattctaacattatttttatgatatttattatgataattatgattgt 25241828  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 4161346 - 4161288
Alignment:
Q  15 tcaaaaggagcacactcctagattccaagccattaccaccagattaacccaagtgggtt 73  Q
    |||||||||||||||| | |||| |||||||| ||||||||||  ||||||| ||||||    
T  4161346 tcaaaaggagcacacttcaagatcccaagccaataccaccagaccaacccaaatgggtt 4161288  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 22760916 - 22760860
Alignment:
Q  20 aggagcacactcctagattccaagccattaccaccagattaacccaagtgggttaat 76  Q
    ||||||||||||| || | ||||| || ||||||||||  |||||||||||||||||    
T  22760916 aggagcacactcccaggtcccaagtcaataccaccagaccaacccaagtgggttaat 22760860  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 5801099 - 5801047
Alignment:
Q  21 ggagcacactcctagattccaagccattaccaccagattaacccaagtgggtt 73  Q
    ||||||||||||||||| |||||| | ||||||||| | ||||||||||||||    
T  5801099 ggagcacactcctagatcccaagctaataccaccaggtcaacccaagtgggtt 5801047  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 23361672 - 23361729
Alignment:
Q  20 aggagcacactcctagattccaagccattaccaccagattaacccaagtgggttaata 77  Q
    ||||||||||||| | || ||||| || ||||||||| | ||||||||||||||||||    
T  23361672 aggagcacactcccatatcccaagtcaataccaccaggtcaacccaagtgggttaata 23361729  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 30127453 - 30127398
Alignment:
Q  20 aggagcacactcctagattccaagccattaccaccagattaacccaagtgggttaa 75  Q
    ||||||||||||| |||  |||||||| ||||||||||  ||||||||||||||||    
T  30127453 aggagcacactcccagaccccaagccaataccaccagaccaacccaagtgggttaa 30127398  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 33549157 - 33549104
Alignment:
Q  20 aggagcacactcctagattccaagccattaccaccagattaacccaagtgggtt 73  Q
    ||||||||||||| || | |||||||| ||||||||||  ||||||||||||||    
T  33549157 aggagcacactcccaggtcccaagccaataccaccagaccaacccaagtgggtt 33549104  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 18825394 - 18825339
Alignment:
Q  20 aggagcacactcctagattccaagccattaccaccagattaacccaagtgggttaa 75  Q
    |||||||||||||||| | ||||||||  |||||||| | ||||||||||||||||    
T  18825394 aggagcacactcctaggtcccaagccaacaccaccaggtaaacccaagtgggttaa 18825339  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 51703832 - 51703777
Alignment:
Q  20 aggagcacactcctagattccaagccattaccaccagattaacccaagtgggttaa 75  Q
    ||||||||||||| ||||||||||||| |||||| |||  ||||||| ||||||||    
T  51703832 aggagcacactcccagattccaagccaataccactagaccaacccaaatgggttaa 51703777  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 11068866 - 11068920
Alignment:
Q  20 aggagcacactcctagattccaagccattaccaccagattaacccaagtgggtta 74  Q
    |||||||||||||| ||| ||||| || ||||||||||| ||||||| |||||||    
T  11068866 aggagcacactcctggatcccaagtcaataccaccagatcaacccaaatgggtta 11068920  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 19528350 - 19528403
Alignment:
Q  20 aggagcacactcctagattccaagccattaccaccagattaacccaagtgggtt 73  Q
    |||||||||||| ||||| |||||||| |||||||||   ||||||||||||||    
T  19528350 aggagcacactcatagatcccaagccaataccaccaggccaacccaagtgggtt 19528403  T

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Target: scaffold0361 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 5286 - 5233
Alignment:
Q  20 aggagcacactcctagattccaagccattaccaccagattaacccaagtgggtt 73  Q
    ||||||||||||| | |||| ||| || ||||||||||| ||||||||||||||    
T  5286 aggagcacactcccatattctaagtcaataccaccagatcaacccaagtgggtt 5233  T

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Target: scaffold0258 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 15346 - 15399
Alignment:
Q  20 aggagcacactcctagattccaagccattaccaccagattaacccaagtgggtt 73  Q
    ||||||||||||| || | |||||||| ||||||||||  ||||||||||||||    
T  15346 aggagcacactcccaggtcccaagccaataccaccagaccaacccaagtgggtt 15399  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 14495828 - 14495885
Alignment:
Q  20 aggagcacactcctagattccaagccattaccaccagattaacccaagtgggttaata 77  Q
    ||||||||||||| |||| ||||| || ||||||||||  ||||||| ||||||||||    
T  14495828 aggagcacactcccagatcccaagtcaataccaccagaccaacccaaatgggttaata 14495885  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 34984859 - 34984806
Alignment:
Q  20 aggagcacactcctagattccaagccattaccaccagattaacccaagtgggtt 73  Q
    ||||||||||||| || |||||||||| |||||| |||  ||||||||||||||    
T  34984859 aggagcacactcccaggttccaagccaataccactagaccaacccaagtgggtt 34984806  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 37443755 - 37443698
Alignment:
Q  20 aggagcacactcctagattccaagccattaccaccagattaacccaagtgggttaata 77  Q
    ||||| ||||||| |||| |||||||| |||||| || | ||||||||||||||||||    
T  37443755 aggagtacactcccagatcccaagccaataccactaggtcaacccaagtgggttaata 37443698  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 39509123 - 39509070
Alignment:
Q  20 aggagcacactcctagattccaagccattaccaccagattaacccaagtgggtt 73  Q
    ||||||||||||| |||| ||||||||||||||  |||  ||||||||||||||    
T  39509123 aggagcacactcccagatcccaagccattaccatgagaccaacccaagtgggtt 39509070  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 51250546 - 51250598
Alignment:
Q  21 ggagcacactcctagattccaagccattaccaccagattaacccaagtgggtt 73  Q
    |||||||||||| |||| |||||||| |||||||||   ||||||||||||||    
T  51250546 ggagcacactcccagatcccaagccaataccaccaggccaacccaagtgggtt 51250598  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 2597243 - 2597296
Alignment:
Q  20 aggagcacactcctagattccaagccattaccaccagattaacccaagtgggtt 73  Q
    ||||||||||||||| || | |||||| ||||||||||  ||||||||||||||    
T  2597243 aggagcacactcctaaatccgaagccaataccaccagaccaacccaagtgggtt 2597296  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 36720434 - 36720381
Alignment:
Q  20 aggagcacactcctagattccaagccattaccaccagattaacccaagtgggtt 73  Q
    ||||||||||||| | || |||||||| ||||||||||  ||||||||||||||    
T  36720434 aggagcacactcccatatcccaagccaataccaccagaccaacccaagtgggtt 36720381  T

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