View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8604_low_14 (Length: 226)

Name: NF8604_low_14
Description: NF8604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8604_low_14
NF8604_low_14
[»] chr1 (3 HSPs)
chr1 (111-209)||(2963718-2963816)
chr1 (111-209)||(2942897-2942995)
chr1 (1-53)||(2963605-2963657)


Alignment Details
Target: chr1 (Bit Score: 87; Significance: 7e-42; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 111 - 209
Target Start/End: Original strand, 2963718 - 2963816
Alignment:
Q  111 tcttataaagggagaatggaccaagccaactccgcaaaagaaccaagacacataagatcacgaaacaaacttaagcactccgctcattggcacgcaaac 209  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  2963718 tcttataaagggagaatcgaccaagccaactccgcaaaagaaccaagacacataagatcacgaaacaaacttaagcactctgctcattggcacccaaac 2963816  T

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Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 111 - 209
Target Start/End: Original strand, 2942897 - 2942995
Alignment:
Q  111 tcttataaagggagaatggaccaagccaactccgcaaaagaaccaagacacataagatcacgaaacaaacttaagcactccgctcattggcacgcaaac 209  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||| |||||    
T  2942897 tcttataaagggagaatggaccaagccaactccaccaaagaaccaagacacataagatcaccaaacaaacccaagcactccgctcattggcacccaaac 2942995  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 2963605 - 2963657
Alignment:
Q  1 tgactgaaaacaccctcccatcaagaacttctagaacaccacaagcgaatagt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2963605 tgactgaaaacaccctcccatcaagaacttctagaacaccacaagcgaatagt 2963657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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