View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8604_low_5 (Length: 374)
Name: NF8604_low_5
Description: NF8604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8604_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 16 - 361
Target Start/End: Original strand, 44004994 - 44005339
Alignment:
| Q |
16 |
cttccttcgtaccacttttggtataaagttataaagagttctgaatgaaactataactaaaaccaaatggcctttgcatccataagcatttgtttgagag |
115 |
Q |
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| T |
44004994 |
cttccttcgtaccacttttggtataaagctataaagagttctgaatgaaactataactaaaaccaaatggcctttgcatccataagcatttgtttgagtg |
44005093 |
T |
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| Q |
116 |
atccatcaacatgatgagatatcacatcttttgaagatccaacaaattttccacctatgaacactgctggaactgaagggttacatccaaaattacccct |
215 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44005094 |
atccatcaacatgatgagatatcacatcttttgaggatcctacaaattttccacctatgaacactgctggaactgaagggttacatccaaaattacccct |
44005193 |
T |
|
| Q |
216 |
caaagcccattccatttctctaccatatgtatcattgtctagttcatatactgcaggacttgctccaagttcatagaaaagttgtttgatgctatgacac |
315 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44005194 |
caaagcccattccatttctctaccatatgtatcattttctagttcatatactgcaggacttgctccaagttcatagaaaagttgtttgatgctatgacac |
44005293 |
T |
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| Q |
316 |
atgtaacatgaactctttgtaaatataactgcagctttctttgatg |
361 |
Q |
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| T |
44005294 |
atgtaacatgaactctttgtaaatataactgcagctttctttgatg |
44005339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 45 - 361
Target Start/End: Original strand, 44008949 - 44009265
Alignment:
| Q |
45 |
tataaagagttctgaatgaaactataactaaaaccaaatggcctttgcatccataagcatttgtttgagagatccatcaacatgatgagatatcacatct |
144 |
Q |
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| T |
44008949 |
tataaagagttctgaatggaaatatgactaaaaccaaatggcctttgcatccataagcatttgtttgagagatccatcaacatgatgagatatcacatct |
44009048 |
T |
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| Q |
145 |
tttgaagatccaacaaattttccacctatgaacactgctggaactgaagggttacatccaaaattacccctcaaagcccattccatttctctaccatatg |
244 |
Q |
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| T |
44009049 |
tttgaagatccaacaaattttccacctatgaacactgctggaactgaagggttacatccaaaattacccctcaaagcccattccatttctctaccatatg |
44009148 |
T |
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| Q |
245 |
tatcattgtctagttcatatactgcaggacttgctccaagttcatagaaaagttgtttgatgctatgacacatgtaacatgaactctttgtaaatataac |
344 |
Q |
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| T |
44009149 |
tatcattgtctagttcatatactgcaggacttgctccaagttcatagaaaagttgtttgatgctatgacacatgtaacatgaactctttgtaaatataac |
44009248 |
T |
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| Q |
345 |
tgcagctttctttgatg |
361 |
Q |
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| T |
44009249 |
tgcagctttctttgatg |
44009265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 71 - 361
Target Start/End: Complemental strand, 39846938 - 39846651
Alignment:
| Q |
71 |
actaaaaccaaatggcctttgcatccataagcatttgtttgagagatccatcaacatgatgagatatcacatcttttgaagatccaacaaattttccacc |
170 |
Q |
| |
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|||| ||||||||||| | ||| |||| |||||||||||||| ||||||||||||||| ||||||||||||| ||||| || || |||||||||||||| |
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| T |
39846938 |
actagaaccaaatggctctagcagccatgagcatttgtttgagtgatccatcaacatgaagagatatcacatcctttgatgaccctacaaattttccacc |
39846839 |
T |
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| Q |
171 |
tatgaacactgctggaactgaagggttacatccaaaattacccctcaaagcccattccatttctctaccatatgtatcattgtctagttcatatactgca |
270 |
Q |
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|||||||||||||| ||||||||||||||||||| || ||||||||||| ||||||||| |||||||| | |||||||| || |||| || ||| |
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| T |
39846838 |
aatgaacactgctggcactgaagggttacatccaa---gactcctcaaagccctttccatttccctaccatagggttcattgtcaagctcatgcacagca |
39846742 |
T |
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| Q |
271 |
ggacttgctccaagttcatagaaaagttgtttgatgctatgacacatgtaacatgaactctttgtaaatataactgcagctttctttgatg |
361 |
Q |
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||||||||||| || |||||||| | |||| | ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
39846741 |
ggacttgctcctagctcatagaacaattgtgttatgctgtgacacatgtagcatgaactctttgtgaatataactgcagctttctttgatg |
39846651 |
T |
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