View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8604_low_7 (Length: 263)
Name: NF8604_low_7
Description: NF8604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8604_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 25494584 - 25494350
Alignment:
| Q |
16 |
cacacaccttccattcaaatcaaaatccttgccgtttagagttgatccatattaaagggttaatgcctatgttgcttgagaaagaattaagttgacatgt |
115 |
Q |
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| T |
25494584 |
cacacaccttccattcaaatcaaaatccttgccgtttagagttgatccatattaaagggttaatgcctatgttgcttgagaaagaattaagttgacatgt |
25494485 |
T |
|
| Q |
116 |
cataatgtaatgtaacattttttaatagaaagaaaacaaaacttgaattcatgattagttgaaacagaaccggttggaatttgaacttgtgcaaatagta |
215 |
Q |
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|||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
25494484 |
cataat-----gtaacatttttcaatagaaagaaaccaaaacttgaattcatgattagttgaaacagaaccggttggaatttgaacttgtacaaatagta |
25494390 |
T |
|
| Q |
216 |
caatctaatttttaagtgtctttttggaaaattaacaccaaa |
257 |
Q |
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||||||||||||||| |||||||| |||||||||||||||| |
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| T |
25494389 |
caatctaatttttaa--gtctttttagaaaattaacaccaaa |
25494350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 257
Target Start/End: Complemental strand, 49263689 - 49263656
Alignment:
| Q |
224 |
tttttaagtgtctttttggaaaattaacaccaaa |
257 |
Q |
| |
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||||||||||||||||| |||||||||||||||| |
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| T |
49263689 |
tttttaagtgtctttttagaaaattaacaccaaa |
49263656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 259
Target Start/End: Complemental strand, 41117608 - 41117573
Alignment:
| Q |
224 |
tttttaagtgtctttttggaaaattaacaccaaact |
259 |
Q |
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| T |
41117608 |
tttttaagtgtctttttagaaaattaacaccaaact |
41117573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 257
Target Start/End: Complemental strand, 16197471 - 16197438
Alignment:
| Q |
224 |
tttttaagtgtctttttggaaaattaacaccaaa |
257 |
Q |
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||||||||||||||||| |||||||||||||||| |
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| T |
16197471 |
tttttaagtgtctttttagaaaattaacaccaaa |
16197438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 257
Target Start/End: Original strand, 39585353 - 39585386
Alignment:
| Q |
224 |
tttttaagtgtctttttggaaaattaacaccaaa |
257 |
Q |
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||||||||||||||||| |||||||||||||||| |
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| T |
39585353 |
tttttaagtgtctttttagaaaattaacaccaaa |
39585386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 9353746 - 9353714
Alignment:
| Q |
224 |
tttttaagtgtctttttggaaaattaacaccaa |
256 |
Q |
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||||||||||||||||| ||||||||||||||| |
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|
| T |
9353746 |
tttttaagtgtctttttagaaaattaacaccaa |
9353714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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