View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8605_high_3 (Length: 240)
Name: NF8605_high_3
Description: NF8605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8605_high_3 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 47050019 - 47050241
Alignment:
| Q |
18 |
aggagcaatggttggatctttgttaaagtaagatacaactgtggaccgtacgatggactcagctgttggacatgaatttgaataaaacccagttttcagt |
117 |
Q |
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| T |
47050019 |
aggagcaatggttggatctttgttaaagtaagatacaactgtggaccgtacgatggactcagctgttggacatgaatttgaataaaacccagttttcagt |
47050118 |
T |
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| Q |
118 |
tgggcatttactgccaaagtcatccccaaaatcaccaagaagcccaatttcacaatcattttgtacgaacacaatgcaaactgaaacaagtattcagata |
217 |
Q |
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| T |
47050119 |
tgggcatttactgccaaagtcatccccaaaatcaccaagaagcccaatttcacaatcattttgtacgaacacaatgcaaactgaaacaagtattcagata |
47050218 |
T |
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| Q |
218 |
caactccacacttggttttttat |
240 |
Q |
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| T |
47050219 |
caactccacacttggttttttat |
47050241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 23 - 236
Target Start/End: Original strand, 47053157 - 47053372
Alignment:
| Q |
23 |
caatggttggatctttgttaaagtaagatacaactgtggaccgtacgatggactcagctgttggacatgaatttgaataaaacccagttttcagttgggc |
122 |
Q |
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| T |
47053157 |
caatggttggatctttgttaaagtaagatacaactgtggaccgtaagatgggcgcagctgttggacatgaatttgattaaaacccacttttcagttgggc |
47053256 |
T |
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| Q |
123 |
atttactgccaaagtcatccccaaaatcaccaagaagcccaatttcacaatcattttgtacga--acacaatgcaaactgaaacaagtattcagatacaa |
220 |
Q |
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| T |
47053257 |
ttcaactgccaaagtcatcaccaaaatcactagggatcccaatcgcacaatcattttggactactatacaatgcaaactgaaacaagaattcagacacaa |
47053356 |
T |
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| Q |
221 |
ctccacacttggtttt |
236 |
Q |
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| T |
47053357 |
cttcactgttggtttt |
47053372 |
T |
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