View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8605_low_1 (Length: 484)

Name: NF8605_low_1
Description: NF8605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8605_low_1
NF8605_low_1
[»] chr4 (2 HSPs)
chr4 (351-471)||(27316307-27316428)
chr4 (304-344)||(6509856-6509896)
[»] chr3 (4 HSPs)
chr3 (268-350)||(28424311-28424393)
chr3 (7-73)||(28424587-28424653)
chr3 (147-213)||(28424448-28424513)
chr3 (304-351)||(45807043-45807090)
[»] chr8 (4 HSPs)
chr8 (268-349)||(23388234-23388315)
chr8 (7-77)||(23388503-23388573)
chr8 (147-213)||(23388367-23388433)
chr8 (13-61)||(36940904-36940950)
[»] chr7 (3 HSPs)
chr7 (7-77)||(42840951-42841021)
chr7 (272-351)||(42840750-42840830)
chr7 (304-344)||(40740666-40740706)
[»] scaffold0380 (1 HSPs)
scaffold0380 (304-343)||(6112-6151)
[»] chr5 (1 HSPs)
chr5 (304-351)||(10021004-10021051)
[»] chr1 (4 HSPs)
chr1 (304-350)||(17050398-17050444)
chr1 (304-350)||(51606914-51606960)
chr1 (304-336)||(38688643-38688675)
chr1 (304-336)||(49420098-49420130)
[»] chr2 (1 HSPs)
chr2 (317-353)||(44094086-44094122)


Alignment Details
Target: chr4 (Bit Score: 90; Significance: 3e-43; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 351 - 471
Target Start/End: Complemental strand, 27316428 - 27316307
Alignment:
Q  351 tatgtttaatcctatttatctttgatgatgtatttacttaccataagtaactaatattcttagataaggattgaatgatggtcctctgcat-aattgttt 449  Q
    |||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||    
T  27316428 tatgtttaatcctatttatctttgatcatgtatttacatactataagtaactaatattcttagattaggattgaatgatgatcctctgcataaattgttt 27316329  T
Q  450 gcaacatgtgatcgtgatgtcc 471  Q
    ||||||||||||||||| ||||    
T  27316328 gcaacatgtgatcgtgaagtcc 27316307  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 304 - 344
Target Start/End: Original strand, 6509856 - 6509896
Alignment:
Q  304 tttcccatcatgggaaacaactttgctttcccaggctaaac 344  Q
    ||||||||  |||||| ||||||||||||||||||||||||    
T  6509856 tttcccatgctgggaagcaactttgctttcccaggctaaac 6509896  T

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Target: chr3 (Bit Score: 79; Significance: 1e-36; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 268 - 350
Target Start/End: Complemental strand, 28424393 - 28424311
Alignment:
Q  268 caggtcatgactgccagctgcaggtaaagagcaaagtttcccatcatgggaaacaactttgctttcccaggctaaacgccacc 350  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28424393 caggtcatgactgccagctgcaggtaaaaagcaaagtttcccatcatgggaaacaactttgctttcccaggctaaacgccacc 28424311  T

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Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 28424653 - 28424587
Alignment:
Q  7 tgtataaaatatggtggaggaagaagcagagaagaggaacaataagaaagatgcagagaaggagagc 73  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28424653 tgtataaaatatggtggaggaagaagcagagaagaggaacaataagaaagatgcagagaagaagagc 28424587  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 147 - 213
Target Start/End: Complemental strand, 28424513 - 28424448
Alignment:
Q  147 aacagtgtgcaattggattaggattgtgacaacagacgagtcatttgttctttgagaatgcaaagtc 213  Q
    ||||| ||||||||||| ||||||| ||||| || | |||||||||||||| |||||||||||||||    
T  28424513 aacagcgtgcaattggagtaggattatgaca-caaatgagtcatttgttctctgagaatgcaaagtc 28424448  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 351
Target Start/End: Original strand, 45807043 - 45807090
Alignment:
Q  304 tttcccatcatgggaaacaactttgctttcccaggctaaacgccacct 351  Q
    ||||||||||| |||||||||||||||||||||  |||||| ||||||    
T  45807043 tttcccatcataggaaacaactttgctttcccattctaaaccccacct 45807090  T

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Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 268 - 349
Target Start/End: Complemental strand, 23388315 - 23388234
Alignment:
Q  268 caggtcatgactgccagctgcaggtaaagagcaaagtttcccatcatgggaaacaactttgctttcccaggctaaacgccac 349  Q
    ||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  23388315 caggtcaggactgccagctgcaggtaaaaagcaaattttcccatcatgggaaacaactttgctttcccaggctaaacgccac 23388234  T

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Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 23388573 - 23388503
Alignment:
Q  7 tgtataaaatatggtggaggaagaagcagagaagaggaacaataagaaagatgcagagaaggagagctgag 77  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  23388573 tgtataaaatatggtggaggaagaagcagggaagaggaacaataagaaagatgcagagaagaagagctgag 23388503  T

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Target: chr8; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 147 - 213
Target Start/End: Complemental strand, 23388433 - 23388367
Alignment:
Q  147 aacagtgtgcaattggattaggattgtgacaacagacgagtcatttgttctttgagaatgcaaagtc 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  23388433 aacagtgtgcaattggattaggattgtgacaacagacgagtcatttgttctcttagaatgcaaagtc 23388367  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 36940904 - 36940950
Alignment:
Q  13 aaatatggtggaggaagaagcagagaagaggaacaataagaaagatgca 61  Q
    ||||||||||||||||||||| ||||||||||   ||||||||||||||    
T  36940904 aaatatggtggaggaagaagcggagaagagga--gataagaaagatgca 36940950  T

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Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 42841021 - 42840951
Alignment:
Q  7 tgtataaaatatggtggaggaagaagcagagaagaggaacaataagaaagatgcagagaaggagagctgag 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  42841021 tgtataaaatatggtggaggaagaagcagagaagaggaacaataagaaagatgcagagaagaaaagctgag 42840951  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 272 - 351
Target Start/End: Complemental strand, 42840830 - 42840750
Alignment:
Q  272 tcatgactgccagctgcaggtaaagagcaaagtttcccatcatg-ggaaacaactttgctttcccaggctaaacgccacct 351  Q
    |||||||||||| ||| ||||||| |||||||||||||||||||   |||||||||| ||||||| | || ||||||||||    
T  42840830 tcatgactgccaactggaggtaaaaagcaaagtttcccatcatgaaaaaacaactttactttccccgacttaacgccacct 42840750  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 304 - 344
Target Start/End: Complemental strand, 40740706 - 40740666
Alignment:
Q  304 tttcccatcatgggaaacaactttgctttcccaggctaaac 344  Q
    |||||||||||||||||||| ||| |||||||| |||||||    
T  40740706 tttcccatcatgggaaacaattttcctttcccatgctaaac 40740666  T

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Target: scaffold0380 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 343
Target Start/End: Original strand, 6112 - 6151
Alignment:
Q  304 tttcccatcatgggaaacaactttgctttcccaggctaaa 343  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  6112 tttcccatcatgggaaacaactttggtttcccaggctaaa 6151  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 351
Target Start/End: Complemental strand, 10021051 - 10021004
Alignment:
Q  304 tttcccatcatgggaaacaactttgctttcccaggctaaacgccacct 351  Q
    |||||||||||||||||| | |||| |||||||||||||||| |||||    
T  10021051 tttcccatcatgggaaactagtttgttttcccaggctaaacggcacct 10021004  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 350
Target Start/End: Original strand, 17050398 - 17050444
Alignment:
Q  304 tttcccatcatgggaaacaactttgctttcccaggctaaacgccacc 350  Q
    ||||||||||||||||||||||||  ||||||| ||||||| |||||    
T  17050398 tttcccatcatgggaaacaactttcatttcccaagctaaactccacc 17050444  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 350
Target Start/End: Complemental strand, 51606960 - 51606914
Alignment:
Q  304 tttcccatcatgggaaacaactttgctttcccaggctaaacgccacc 350  Q
    |||||||||||||||||||||||| ||| |||| ||||||| |||||    
T  51606960 tttcccatcatgggaaacaactttccttgcccatgctaaactccacc 51606914  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 304 - 336
Target Start/End: Original strand, 38688643 - 38688675
Alignment:
Q  304 tttcccatcatgggaaacaactttgctttccca 336  Q
    |||||||||||||||||||||||| ||||||||    
T  38688643 tttcccatcatgggaaacaacttttctttccca 38688675  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 304 - 336
Target Start/End: Complemental strand, 49420130 - 49420098
Alignment:
Q  304 tttcccatcatgggaaacaactttgctttccca 336  Q
    |||||||||||||||||||||||| ||||||||    
T  49420130 tttcccatcatgggaaacaactttcctttccca 49420098  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 353
Target Start/End: Complemental strand, 44094122 - 44094086
Alignment:
Q  317 gaaacaactttgctttcccaggctaaacgccacctat 353  Q
    |||||||||||| |||||||||||||| |||||||||    
T  44094122 gaaacaactttgatttcccaggctaaatgccacctat 44094086  T

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