View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8605_low_2 (Length: 476)
Name: NF8605_low_2
Description: NF8605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8605_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 20 - 467
Target Start/End: Complemental strand, 40184662 - 40184215
Alignment:
| Q |
20 |
aggaggtcgggcagaaagcaattcaacgcgaagagtcgagagtcgaaggggagattatcaagctgattgtcagtggagaaggggataagctgaaggcaaa |
119 |
Q |
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| T |
40184662 |
aggaggccgggcagaaagcaattcaacgcgaagagtcgagagtcgaaggggagattatcaagctgattgtcagtggagaaggggataagctgaaggcaaa |
40184563 |
T |
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| Q |
120 |
ttccggtgaagcggttacgattcgggagagtagtatttgtgttgggtgtcatgatgatgaggaaggggagtatgttgtgtgggaatggcatgggcatatt |
219 |
Q |
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| T |
40184562 |
ttccggtgaagcggttacgattcgggagagtagtatttgtgttgggtgtcatgatgatgaggaaggggagtatgttgtgtgggaatggcatgggcatatt |
40184463 |
T |
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| Q |
220 |
atggggtatagtgatgatcatgggttttcgcctgagtatatttatgggaattattttcagaggactgcgccaaaacctttggtgcgtccctatccatcac |
319 |
Q |
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| T |
40184462 |
atggggtatagtgatgatcatgggttttcgcctgagtatatttatgggaattattttcagaggactgcgccaaaacctttggtgcgtccttattcatcac |
40184363 |
T |
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| Q |
320 |
cagttggagatgaagatgaagttgatgatgaagctgatgttgtcagtatgggtttgaaagatttgattgctgatgttgacactgatgctgatgatgctgc |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40184362 |
cagttggagatgaagatgaagttgatgatgaagctgatgttgtcagtatgggtttgaaagatttgattgctgatgttgacactgatgctgatgatgctgc |
40184263 |
T |
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| Q |
420 |
tcctgctaggattcttcatcgcagtctcaatgctggctctgctcctcc |
467 |
Q |
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| T |
40184262 |
tcctgctaggattcttcatcgcagtctcaatgctggttctgctcctcc |
40184215 |
T |
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