View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8606A_high_16 (Length: 358)
Name: NF8606A_high_16
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 24 - 350
Target Start/End: Original strand, 42307941 - 42308272
Alignment:
| Q |
24 |
cattataaccaaaattaaattttgatattattattcctattatacccttttgaaaacagaaacaaaacaactccattcaaaataatcattcacatgacgc |
123 |
Q |
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| T |
42307941 |
cattataaccaaaattaaattttgatattattattcctattatacccttttgaaaacagaaacaaaacaactccattcaaaataatcattcacatgacgc |
42308040 |
T |
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| Q |
124 |
cataaccataatcatgatcataatgaaaccgaaacatgaaaatcttttaggttcttataacaagccgccttctatgcttacacaatgcatgatagttgtg |
223 |
Q |
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| T |
42308041 |
cataaccataatcatgatcataatgaaaccgaaacatgaaaatcttttaggttcttataacaagccgccttctatgcttacacaatgcatgatagttgtg |
42308140 |
T |
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| Q |
224 |
tcagattgaggagagacacgtccttccctcctaaaccc------ccctctttccttaagaacctcattttcttctataaattcacattcacattcttcat |
317 |
Q |
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|||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42308141 |
tcagattgaggagagacacgtccttcccccctaaccccctccctccctctttccttaagaacctcattttcctctataaattcacattcacattcttcat |
42308240 |
T |
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| Q |
318 |
tttccattcactcctaactcacccatattcttc |
350 |
Q |
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|||||||||||| |||||||| |||| |||||| |
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| T |
42308241 |
tttccattcact-ctaactcatccattttcttc |
42308272 |
T |
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