View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8606A_high_27 (Length: 254)
Name: NF8606A_high_27
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_high_27 |
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Alignment Details
Target: chr5 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 29664093 - 29663841
Alignment:
| Q |
1 |
gatttctaattgacattttcttcgtaatattttagcttcttagaaaaagaataagacgacaataaattttataacaattttttattttaaagggaatcct |
100 |
Q |
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| T |
29664093 |
gatttctaattgacattttttaagtaatattttagcttcttagaaaaagaataagacgacaataaattttataacaattttttattttaaagggaatcct |
29663994 |
T |
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| Q |
101 |
agattg----agtgttagtaaggtacattgcctttaactactgaaatcaagtcgatatcttgcataacaa---nnnnnnnnnnnnnnnnaaaaaatccaa |
193 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||| ||||| |
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| T |
29663993 |
agattgagtgagtgttagtaaggtacattgcctttaactactgaaatcaagtcgatatcttgtatgacaattttttattttttatttttaaaaattccaa |
29663894 |
T |
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| Q |
194 |
gtttcaatgccaacttcctcccattttctttgtaagcttgcaaatacatatat |
246 |
Q |
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| T |
29663893 |
gtttcaatgccaacttcctcccattttctttgtaagcttgcaattacatatat |
29663841 |
T |
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