View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8606A_high_5 (Length: 497)
Name: NF8606A_high_5
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 448; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 27 - 482
Target Start/End: Complemental strand, 3067775 - 3067320
Alignment:
| Q |
27 |
aggttggactatagtgtggtctcagcctgaaaatatatgtcattattttcctaaattaggtagtggtgtttgtggatataatagctactgcactttggga |
126 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3067775 |
aggttggactatagtgtggtctcagcctgaaaatatatgtcattattttcctaaattaggtagtggtgtttgtggatataatagctactgcactttggga |
3067676 |
T |
|
| Q |
127 |
gagaataagaggccaacatgtcggtgtcgaaaaagttactcactggtggatcctgacgatccatttggtagctgcaagccagacctcatacatggatatg |
226 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3067675 |
gagaataagaggccaacacgtcggtgtcgaaaaagttactcactggtggatcctgacgatccatttggtagctgcaagccagacctcatacatggatatg |
3067576 |
T |
|
| Q |
227 |
cagaagatgaactaagtgaaacaaaggatctgtactactctaagattttgaatggcacttattggcatcaaaacgattatacgcatctaaagccttttat |
326 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3067575 |
cagaagatgaactaagtgaaacaaaggatctgtactactctaagattttgaatggcacttattggcatcaaaacgattatacgcatctaaagccttttat |
3067476 |
T |
|
| Q |
327 |
tgaagtacaatgtattctagcttgtatggaagactgcatgtattattatttgtttatattctggcacattgatatttgatatatccttgatgttcaattt |
426 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3067475 |
tgaagtacaatgtattatagcttgtatggaagactgcatgtattattatttgtttatattctggcacattgatatttgatatatccttgatgttcaattt |
3067376 |
T |
|
| Q |
427 |
cacatgttatcaacaacttgactatataaataattaatagttatttattctctaat |
482 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3067375 |
cacatgttatcaacaacttgactatataaataattaatagttatttattctctaat |
3067320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 30 - 257
Target Start/End: Complemental strand, 3071411 - 3071184
Alignment:
| Q |
30 |
ttggactatagtgtggtctcagcctgaaaatatatgtcattattttcctaaattaggtagtggtgtttgtggatataatagctactgcactttgggagag |
129 |
Q |
| |
|
|||||||| |||||||||||| ||| ||||||||||||| ||| || || | |||||||||||||||||||||||||| | ||||||||||||||| |
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|
| T |
3071411 |
ttggactacagtgtggtctcatcctaaaaatatatgtcaatatattgttagttcaggtagtggtgtttgtggatataataccatctgcactttgggagat |
3071312 |
T |
|
| Q |
130 |
aataagaggccaacatgtcggtgtcgaaaaagttactcactggtggatcctgacgatccatttggtagctgcaagccagacctcatacatggatatgcag |
229 |
Q |
| |
|
||||||| |||||||||||||||| |||| ||||||||||| | |||||||| |||||| |||||||||||||||||| ||||||| |||| ||||| |
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|
| T |
3071311 |
gataagagaccaacatgtcggtgtccaaaacgttactcactgcttgatcctgatgatccacatggtagctgcaagccagatttcatacaaggatgtgcag |
3071212 |
T |
|
| Q |
230 |
aagatgaactaagtgaaacaaaggatct |
257 |
Q |
| |
|
||||||||| |||| ||||||||||||| |
|
|
| T |
3071211 |
aagatgaacaaagtaaaacaaaggatct |
3071184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 30 - 243
Target Start/End: Original strand, 3055555 - 3055768
Alignment:
| Q |
30 |
ttggactatagtgtggtctcagcctgaaaatatatgtcattattttcctaaattaggtagtggtgtttgtggatataatagctactgcactttgggagag |
129 |
Q |
| |
|
|||||| |||||||||||| | ||||| ||||||||| ||||| || |||| ||| ||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
3055555 |
ttggaccatagtgtggtctaaacctgataatatatgtaattatattgctaatgaagggagtggtgtttgtggatataatagcttctgcactttgggagtt |
3055654 |
T |
|
| Q |
130 |
aataagaggccaacatgtcggtgtcgaaaaagttactcactggtggatcctgacgatccatttggtagctgcaagccagacctcatacatggatatgcag |
229 |
Q |
| |
|
||||||| |||||||||| ||||| |||| | ||||||||||| |||||||| |||||| |||||||||||||||||||| ||||||| |||| ||||| |
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|
| T |
3055655 |
gataagagaccaacatgtcagtgtccaaaacgatactcactggttgatcctgatgatccacttggtagctgcaagccagacttcatacaaggatgtgcag |
3055754 |
T |
|
| Q |
230 |
aagatgaactaagt |
243 |
Q |
| |
|
|||||||||||||| |
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|
| T |
3055755 |
aagatgaactaagt |
3055768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 30 - 257
Target Start/End: Original strand, 3040546 - 3040773
Alignment:
| Q |
30 |
ttggactatagtgtggtctcagcctgaaaatatatgtcattattttcctaaattaggtagtggtgtttgtggatataatagctactgcactttgggagag |
129 |
Q |
| |
|
|||||||| |||||||||||| ||| ||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
3040546 |
ttggactacagtgtggtctcatcctcgaaatatatgtcattattttgttactgaaggtagtggtgtttgtggatataatagcatatgcactttgggagat |
3040645 |
T |
|
| Q |
130 |
aataagaggccaacatgtcggtgtcgaaaaagttactcactggtggatcctgacgatccatttggtagctgcaagccagacctcatacatggatatgcag |
229 |
Q |
| |
|
||| ||| ||| ||| |||||||| | | ||||||||||| || ||||||||| |||| | |||||||||||||||||| || |||| |||| ||||| |
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|
| T |
3040646 |
gatacgagaccagcatttcggtgtccagatagttactcactagttgatcctgactatccttatggtagctgcaagccagatttcgtacaaggatgtgcag |
3040745 |
T |
|
| Q |
230 |
aagatgaactaagtgaaacaaaggatct |
257 |
Q |
| |
|
||||||||||| || ||||||||||||| |
|
|
| T |
3040746 |
aagatgaactatgtaaaacaaaggatct |
3040773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 27 - 243
Target Start/End: Original strand, 3034690 - 3034906
Alignment:
| Q |
27 |
aggttggactatagtgtggtctcagcctgaaaatatatgtcattattttcctaaattaggtagtggtgtttgtggatataatagctactgcactttggga |
126 |
Q |
| |
|
||||||||| | |||||||||| ||||||| ||||||||| |||| || || ||||||||||||||||||||||||||||| |||||||||| | |
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|
| T |
3034690 |
aggttggaccacagtgtggtctaagcctgataatatatgtacttatattgttagtgcaggtagtggtgtttgtggatataatagcttatgcactttggaa |
3034789 |
T |
|
| Q |
127 |
gagaataagaggccaacatgtcggtgtcgaaaaagttactcactggtggatcctgacgatccatttggtagctgcaagccagacctcatacatggatatg |
226 |
Q |
| |
|
| ||||||| || | ||||| ||||| |||| | ||||| ||||| |||||||| ||||||||||||||||||||||||||| ||||||| |||| || |
|
|
| T |
3034790 |
gttgataagagaccgaaatgtcagtgtccaaaacgatactcgctggttgatcctgaagatccatttggtagctgcaagccagacttcatacaaggatgtg |
3034889 |
T |
|
| Q |
227 |
cagaagatgaactaagt |
243 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
3034890 |
cagaagatgaaccaagt |
3034906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 84 - 243
Target Start/End: Original strand, 3042789 - 3042948
Alignment:
| Q |
84 |
aggtagtggtgtttgtggatataatagctactgcactttgggagagaataagaggccaacatgtcggtgtcgaaaaagttactcactggtggatcctgac |
183 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| ||||| | |||||||||| ||||| |||||||||||||||||| ||| | || |
|
|
| T |
3042789 |
aggtagtggtgtttgtggatataatagcttctgcactttgggagttgataagtgaccaacatgtcagtgtccaaaaagttactcactggttgatgccgat |
3042888 |
T |
|
| Q |
184 |
gatccatttggtagctgcaagccagacctcatacatggatatgcagaagatgaactaagt |
243 |
Q |
| |
|
|||||| |||||| ||| ||||| || |||| || |||| ||||||||||||||||||| |
|
|
| T |
3042889 |
gatccacttggtacttgcgagccaaacttcatgcaaggatgtgcagaagatgaactaagt |
3042948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 84 - 209
Target Start/End: Complemental strand, 3063682 - 3063557
Alignment:
| Q |
84 |
aggtagtggtgtttgtggatataatagctactgcactttgggagagaataagaggccaacatgtcggtgtcgaaaaagttactcactggtggatcctgac |
183 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||| ||||| ||||| |||| ||||||||| | |||||| | |
|
|
| T |
3063682 |
aggtagtggtgtttgtggatataatagcttctgcactttgggagatgataagagaccaaaatgtcagtgtccaaaacagtactcactgattgatcctaat |
3063583 |
T |
|
| Q |
184 |
gatccatttggtagctgcaagccaga |
209 |
Q |
| |
|
||||||| ||| |||||||||||||| |
|
|
| T |
3063582 |
gatccatatggcagctgcaagccaga |
3063557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 103 - 243
Target Start/End: Complemental strand, 25125466 - 25125326
Alignment:
| Q |
103 |
tataatagctactgcactttgggagagaataagaggccaacatgtcggtgtcgaaaaagttactcactggtggatcctgacgatccatttggtagctgca |
202 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||| |||||||||| ||||| |||||||||||||||||| ||||| || |||||| |||||| ||| |
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|
| T |
25125466 |
tataatagcttctgcactttgggagttgataagagaccaacatgtcagtgtccaaaaagttactcactggttgatcccgatgatccacttggtacttgcg |
25125367 |
T |
|
| Q |
203 |
agccagacctcatacatggatatgcagaagatgaactaagt |
243 |
Q |
| |
|
||| |||| |||| || |||| || |||||||||||||||| |
|
|
| T |
25125366 |
agcaagacttcatgcaaggatgtggagaagatgaactaagt |
25125326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 419 - 482
Target Start/End: Complemental strand, 3052679 - 3052618
Alignment:
| Q |
419 |
ttcaatttcacatgttatcaacaacttgactatataaataattaatagttatttattctctaat |
482 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
3052679 |
ttcaatttcatatgatatcaacaacttgactatataaata--gaatagttatttattctctaat |
3052618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 424 - 481
Target Start/End: Original strand, 6769824 - 6769879
Alignment:
| Q |
424 |
tttcacatgttatcaacaacttgactatataaataattaatagttatttattctctaa |
481 |
Q |
| |
|
||||| |||||||||||||||| ||| |||| ||||||||||||||||||||||||| |
|
|
| T |
6769824 |
tttcatatgttatcaacaacttcactctata--taattaatagttatttattctctaa |
6769879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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