View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8606A_high_7 (Length: 474)
Name: NF8606A_high_7
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_high_7 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 124 - 474
Target Start/End: Complemental strand, 34142580 - 34142230
Alignment:
| Q |
124 |
tactggattctgtctcacggataactctgttcgattgtagagttgccaaagccaaatgttatcaagggagagattaatcaagatattaaaagtcactttg |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34142580 |
tactggattctgtctcacggataactctgttcgattgtagagttgccaaagccaaatgttattaagggagagattaatcaagatattaaaagtcactttg |
34142481 |
T |
|
| Q |
224 |
aaactgcagccactatctcctgtgaggtgctcactcataatgactattaaattaaccgtccctctttgagcttgtttatacattattatatagtttatac |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34142480 |
aaactgcagccactatctcctgtgaggtgctcactcataatgactattaaattaaccgtccctctttgagcttgtttatacattattatatagtttatac |
34142381 |
T |
|
| Q |
324 |
aattaattgattttgcctcacaaactgggtttttggtagcaagattatggttgcaaatgagtagagctagttcaatgatttttgaatgcttgttattttc |
423 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34142380 |
aattaattgattttgcctcacaaactgggtttttggtagcaagattatggttgcaaatgcgtagagctagttcaatgatttttgaatgcttgttattttc |
34142281 |
T |
|
| Q |
424 |
catctgatcaaatgctaagttgctaacatgttttgcatattgatatttgtg |
474 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34142280 |
catctgatcaaatgctaagttgctaacatgttttgcatattgatatttgtg |
34142230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University