View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8606A_high_9 (Length: 442)
Name: NF8606A_high_9
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 23 - 436
Target Start/End: Complemental strand, 6916068 - 6915655
Alignment:
| Q |
23 |
aagtggttcaatatatccaatcactcgtccatattgtccttgtcctccagattgcttcttatgtaaataatcaaaatcagcacgttgagtaacagtttct |
122 |
Q |
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| T |
6916068 |
aagtggttcaatatatccaatcactcgtccatattgtccttgccctccagattgcttcttatgtaaataatcaaaatcagcacgttgagtaacagtttct |
6915969 |
T |
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| Q |
123 |
ctgaagtttacccggggctttccaactgtagcatcaacaccatactccatcttaatgcatttaacataaatatctaagtgtagttctcccattccagaaa |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
6915968 |
ctgaagtttacccggggctttccaactgtagcatcaaccccatactccatcttaatgcgtttaacataaatatctaagtgtagttctcccattccagaaa |
6915869 |
T |
|
| Q |
223 |
tgattgtttgcccactctctgggtccaagctaacacggaaagtaggatcctctctttggaagcggttcaaagcttttgaaaatttccctccagaatcttt |
322 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6915868 |
tgattgtttgcccactctctgggtccaagctaacacgaaaagtaggatcctctctttggaagcggttcaaagcttttgaaaatttccctccagaatcttt |
6915769 |
T |
|
| Q |
323 |
tgagactggctgtacagctaatgacatcacgggctcaggaacattcatagaagtcattgtgtatttaaccgacccatcagtaaatgtatcgccggatgca |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
6915768 |
tgagactggctgtacagctaatgacatcacgggctcaggaacattcatagaagtcattgtgtatttaaccgacccatcagtaaatgtatcgctggatgca |
6915669 |
T |
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| Q |
423 |
caatcaacaccaaa |
436 |
Q |
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| T |
6915668 |
caatcaacaccaaa |
6915655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 7e-53; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 15039269 - 15039390
Alignment:
| Q |
39 |
ccaatcactcgtccatattgtccttgtcctccagattgcttcttatgtaaataatcaaaatcagcacgttgagtaacagtttctctgaagtttacccggg |
138 |
Q |
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|||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
15039269 |
ccaatcacccgtccatattgtccttgccctccggattgcttcttatgtaaataatcaaaatcagcacgttgagtaacagtttctctgaagtttacacggg |
15039368 |
T |
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| Q |
139 |
gctttccaactgtagcatcaac |
160 |
Q |
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| T |
15039369 |
gctttccaactgtagcatcaac |
15039390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 308 - 412
Target Start/End: Original strand, 15040241 - 15040345
Alignment:
| Q |
308 |
ccctccagaatcttttgagactggctgtacagctaatgacatcacgggctcaggaacattcatagaagtcattgtgtatttaaccgacccatcagtaaat |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||| |||||||| |||||||||||||| |
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| T |
15040241 |
ccctccagaatcttttgagactggctgtacagctaatgacatcacaggctcaggaacactcattgaagtcattgtatatttaacagacccatcagtaaaa |
15040340 |
T |
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| Q |
408 |
gtatc |
412 |
Q |
| |
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||||| |
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| T |
15040341 |
gtatc |
15040345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 231 - 304
Target Start/End: Original strand, 15040064 - 15040137
Alignment:
| Q |
231 |
tgcccactctctgggtccaagctaacacggaaagtaggatcctctctttggaagcggttcaaagcttttgaaaa |
304 |
Q |
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| T |
15040064 |
tgcccactctctgggtccaagccaacacggaaagtaggatcctctctttggaagcggttcaaagcttttgaaaa |
15040137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 175 - 229
Target Start/End: Original strand, 15039923 - 15039977
Alignment:
| Q |
175 |
taatgcatttaacataaatatctaagtgtagttctcccattccagaaatgattgt |
229 |
Q |
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| T |
15039923 |
taatgcgttcaacatagatatctaagtgcagttctcccattccagaaataattgt |
15039977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 259 - 328
Target Start/End: Original strand, 43895529 - 43895598
Alignment:
| Q |
259 |
ggaaagtaggatcctctctttggaagcggttcaaagcttttgaaaatttccctccagaatcttttgagac |
328 |
Q |
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| T |
43895529 |
ggaaagtaggatcctttctttgaaaaccattcaaagcagttgaaaattgccctccagaatcttttgagac |
43895598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 259 - 328
Target Start/End: Original strand, 44305953 - 44306022
Alignment:
| Q |
259 |
ggaaagtaggatcctctctttggaagcggttcaaagcttttgaaaatttccctccagaatcttttgagac |
328 |
Q |
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| T |
44305953 |
ggaaagtaggatcctttctttgaaaaccattcaaagcacttgaaaattgccctccagaatcttttgagac |
44306022 |
T |
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