View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8606A_low_10 (Length: 460)
Name: NF8606A_low_10
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_10 |
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| [»] scaffold0057 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 23 - 448
Target Start/End: Original strand, 46844530 - 46844953
Alignment:
| Q |
23 |
ccgtgtctgtcttattacatcaaaggaaagtatgatttgctaatttgtgtccgattagaattagaacgattccttgaaggaatgatagtgaataccatga |
122 |
Q |
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| T |
46844530 |
ccgtgtctgtcttattacatcaaaggaaagtataatttgctaatttgtgtccgattagaattagaccgattccttgaaggaatgatagtgaataccatga |
46844629 |
T |
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| Q |
123 |
gatcttgaacctagttgcattattgcattgcaggggtgagatggcattttgcagccatgaatgccgtgaccagaggatgttgttggaggacgtgatgcct |
222 |
Q |
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| T |
46844630 |
gatcttgaacctagttgcattattgcattgcaggggtgagatggcattttgcagccatgaatgccgtgaccagaggatgttgttggaggacgtgatgcct |
46844729 |
T |
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| Q |
223 |
atataacacaaaagatgcctaaattggaagctaacgatgattgagtatgtgacataattccacctaaacaaaaacaatttgacctttgcttcaatggact |
322 |
Q |
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| T |
46844730 |
atatagcacaa--gatgcctaaattggaagctaaggatgattgagtatgtgacataattccacctaaacaaaaacaatttgacctttgcttcaatggact |
46844827 |
T |
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| Q |
323 |
tagaatatgaaataatcctcagaaatcttatatcaaagtgcttgattttgatctctctgcttctcaactcaacctctctaaggtagctgcacaaaatttt |
422 |
Q |
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| T |
46844828 |
tagaatatgaaataatcctcagaaatcttatatcaaagtgcttgattttgatctctctgcttctcaactcgacctctctaaggtagctgcacaaaatttt |
46844927 |
T |
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| Q |
423 |
gagaggaattaaaatgctgagatatt |
448 |
Q |
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| T |
46844928 |
gagaggaattaaaatgctgagatatt |
46844953 |
T |
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Target: scaffold0057 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 155 - 212
Target Start/End: Complemental strand, 48986 - 48929
Alignment:
| Q |
155 |
ggggtgagatggcattttgcagccatgaatgccgtgaccagaggatgttgttggagga |
212 |
Q |
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| T |
48986 |
ggggtgagatggcattttgcaaccctgaatgccgtaaccagaggaaactgttggagga |
48929 |
T |
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