View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8606A_low_105 (Length: 300)
Name: NF8606A_low_105
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_105 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 17 - 295
Target Start/End: Original strand, 1702066 - 1702344
Alignment:
| Q |
17 |
cttaactctcatggtatgtctcacgatatcagcccaccgtacactcccgaacatattggtattgcagaacgcaaacatcgtcatatagtagaaacatcgc |
116 |
Q |
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| T |
1702066 |
cttaactctcatggtatatctcactatatcagcccaccgtacactcccgaacatattggtattgcagaacgcaaacatcgtcatatagtagaaacatcgc |
1702165 |
T |
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| Q |
117 |
tcaccctcatgtctcactctcatgttccacaaaaattcttgtgttatgccttccaaatggcggtgtatttaataaatcgcatgacaacaacacatcttaa |
216 |
Q |
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| T |
1702166 |
tcaccctcatgtctcactctcatgttccacaaaaattctggtgttatgccttccaaatggcggtgtatttaataaatcgcatgccaacaacacatcttaa |
1702265 |
T |
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| Q |
217 |
aaacaaatgtcctaatgaaattctgtttggttccactcctaattatcttaatcttggagtctttggatatctatgctac |
295 |
Q |
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| T |
1702266 |
aaacaaatgtcctcatgaaattctgtttggttccactcctaattatcttaatcttcgagtctttggatgtctgtgctac |
1702344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 177
Target Start/End: Original strand, 5400832 - 5400962
Alignment:
| Q |
47 |
agcccaccgtacactcccgaacatattggtattgcagaacgcaaacatcgtcatatagtagaaacatcgctcaccctcatgtctcactctcatgttccac |
146 |
Q |
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| T |
5400832 |
agcccaccttatactcctgaacacattggcattgctgaacgcaaacaccgccatatagtagaaactgctctcacacttctctctcactcttctgtacctc |
5400931 |
T |
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| Q |
147 |
aaaaattcttgtgttatgccttccaaatggc |
177 |
Q |
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| T |
5400932 |
aaacattctggtgttatgcttttcaaatggc |
5400962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 177
Target Start/End: Original strand, 3541807 - 3541937
Alignment:
| Q |
47 |
agcccaccgtacactcccgaacatattggtattgcagaacgcaaacatcgtcatatagtagaaacatcgctcaccctcatgtctcactctcatgttccac |
146 |
Q |
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| T |
3541807 |
agcccaccttatactcctgaacacattggcattgctgaacgcaaacaccgccatatagtagaaactgctctcacacttctctctcactcttctgtacctc |
3541906 |
T |
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| Q |
147 |
aaaaattcttgtgttatgccttccaaatggc |
177 |
Q |
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| T |
3541907 |
aaacattctggtgttatgcttttcaaatggc |
3541937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 111
Target Start/End: Complemental strand, 26592339 - 26592278
Alignment:
| Q |
50 |
ccaccgtacactcccgaacatattggtattgcagaacgcaaacatcgtcatatagtagaaac |
111 |
Q |
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| T |
26592339 |
ccaccttacactcctgaacatattggcattgcagaacgcaaacattgccatatagtcgaaac |
26592278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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