View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8606A_low_106 (Length: 299)
Name: NF8606A_low_106
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_106 |
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Alignment Details
Target: chr4 (Bit Score: 134; Significance: 9e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 27 - 223
Target Start/End: Original strand, 45521270 - 45521467
Alignment:
| Q |
27 |
attaatcacaaaaattaaaagccacnnnnnnnnttaaactttattgtccgaaaaagaagagagtattgagttctgtcaggaaaa-aacgtgcaagagtag |
125 |
Q |
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| T |
45521270 |
attaatcacagaaattaaaagcaacaaaaaaaattaaactttattgtccgaaaaagaagagagtattgagatctgtcaggaaaaaaacgtgcaagagtat |
45521369 |
T |
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| Q |
126 |
tggggaagtggatgcaaccataaatgttattatcggagaaatggggaaggagatgtcattaatgtttcatcatcaaacccaaaataccttaatagtta |
223 |
Q |
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| T |
45521370 |
tggggaagtggatgcaaccatagatgctattattggagaaatggggaaggagatgtcgttaatgtttcatcatcaaacccaaaataccttaatagtta |
45521467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 60 - 236
Target Start/End: Original strand, 10566829 - 10567007
Alignment:
| Q |
60 |
ttaaactttattgtccgaaaaagaagagagtattgagttctgtcaggaaaa--aacgtgcaagagtagtggggaagtggatgcaaccataaatgttatta |
157 |
Q |
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| T |
10566829 |
ttaaactttattgtccgaaaaagaagagagtattgagatctgtcatgaaaaaaaacgtgcaagagtattggggaagtggatgcaaccatagatgctatta |
10566928 |
T |
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| Q |
158 |
tcggagaaatggggaaggagatgtcattaatgtttcatcatcaaacccaaaataccttaatagttaatataggaagaag |
236 |
Q |
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| T |
10566929 |
ttggagaaatggggaaggagatgtcgttaatgtttcatcatcaaacccaaaataccctaatagttaatatatgaagaag |
10567007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 79 - 207
Target Start/End: Complemental strand, 52727862 - 52727735
Alignment:
| Q |
79 |
aaagaagagagtattgagttctgtcaggaaaaaacgtgcaagagtagtggggaagtggatgcaaccataaatgttattatcggagaaatggggaaggaga |
178 |
Q |
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| T |
52727862 |
aaagaagagagtacagggatctgccaggaaaaaaacttgaaaagtattggggaagtggatgcaaccatagatgctatgct-ggagaaatggaaaaggaga |
52727764 |
T |
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| Q |
179 |
tgtcattaatgtttcatcatcaaacccaa |
207 |
Q |
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| T |
52727763 |
tgtcattaacgtttcaccattaaacccaa |
52727735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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