View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8606A_low_108 (Length: 298)
Name: NF8606A_low_108
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_108 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 4082873 - 4083159
Alignment:
| Q |
1 |
aaagaacatagaacaaattttcagcaatagaaagcacttacatagataatatcttttgtcatgggaagaagattgccctatgacaatgccaataattcat |
100 |
Q |
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| T |
4082873 |
aaagaacatagaacaaattgtcagcaatagaaatcacttacatcgataatatcttttgtcatgggaagaagattgccctatgacaatgccaacaatttat |
4082972 |
T |
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| Q |
101 |
tgataggtccatttctatatttttcattctccctaataggattagcaacaagcattgccataatcacaactctatgtagtgttcgatttcgaagaagaaa |
200 |
Q |
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| T |
4082973 |
taataggtccatttctaaatttttcattctccctaataggattagcaacaagcattgccataatcacaactctatgtagtgttcgatttcgaagaagaaa |
4083072 |
T |
|
| Q |
201 |
attgacgccgccccctacaacaccgatatcaaacaccaaagaagccacaaccacggacaaaaacacaacaaacgctacaatattcat |
287 |
Q |
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| T |
4083073 |
attgacgccgccccctacaacaccgatatcaaacaccaaagaagccacaaccacggacaaaaacacaacaaacgctacaatattcat |
4083159 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 196
Target Start/End: Complemental strand, 48203072 - 48203029
Alignment:
| Q |
153 |
cattgccataatcacaactctatgtagtgttcgatttcgaagaa |
196 |
Q |
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| T |
48203072 |
cattgccataatcacaactatatgtagttttcgattccgaagaa |
48203029 |
T |
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