View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8606A_low_116 (Length: 288)

Name: NF8606A_low_116
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8606A_low_116
NF8606A_low_116
[»] chr1 (3 HSPs)
chr1 (16-66)||(9906611-9906661)
chr1 (16-66)||(18703820-18703870)
chr1 (63-100)||(18703882-18703919)
[»] chr8 (3 HSPs)
chr8 (29-66)||(29865087-29865124)
chr8 (24-66)||(7275901-7275943)
chr8 (24-66)||(26174760-26174802)
[»] chr7 (2 HSPs)
chr7 (26-66)||(7734612-7734652)
chr7 (24-66)||(41831942-41831984)
[»] scaffold1412 (1 HSPs)
scaffold1412 (24-66)||(542-584)
[»] scaffold0001 (1 HSPs)
scaffold0001 (24-66)||(145401-145443)
[»] chr6 (1 HSPs)
chr6 (24-66)||(6823813-6823855)
[»] chr2 (3 HSPs)
chr2 (24-66)||(31270221-31270263)
chr2 (63-94)||(24038752-24038783)
chr2 (24-65)||(24038796-24038837)
[»] scaffold0525 (1 HSPs)
scaffold0525 (24-66)||(6682-6724)
[»] chr5 (2 HSPs)
chr5 (63-100)||(21255907-21255944)
chr5 (17-66)||(35305414-35305463)


Alignment Details
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 9906611 - 9906661
Alignment:
Q  16 aaacaaggagccaatggagaggcatagccatgtgatgtgtcttcaaaccat 66  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  9906611 aaacaaggagccaatggagatgcatagccatgtgatatgtcttcaaaccat 9906661  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 18703820 - 18703870
Alignment:
Q  16 aaacaaggagccaatggagaggcatagccatgtgatgtgtcttcaaaccat 66  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  18703820 aaacaaggagccaatagagatgcatagccatgtgatgtgtcttcaaaccat 18703870  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 100
Target Start/End: Original strand, 18703882 - 18703919
Alignment:
Q  63 ccatgttgatgcattcaaaccataggtcaaaatcaatg 100  Q
    |||||||||||||||||||||||||| ||||| |||||    
T  18703882 ccatgttgatgcattcaaaccataggccaaaaccaatg 18703919  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 66
Target Start/End: Original strand, 29865087 - 29865124
Alignment:
Q  29 atggagaggcatagccatgtgatgtgtcttcaaaccat 66  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29865087 atggagaggcatagccatgtgatgtgtcttcaaaccat 29865124  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 66
Target Start/End: Original strand, 7275901 - 7275943
Alignment:
Q  24 agccaatggagaggcatagccatgtgatgtgtcttcaaaccat 66  Q
    ||||||| |||| |||||||||||||| |||||||||||||||    
T  7275901 agccaatagagatgcatagccatgtgaggtgtcttcaaaccat 7275943  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 66
Target Start/End: Complemental strand, 26174802 - 26174760
Alignment:
Q  24 agccaatggagaggcatagccatgtgatgtgtcttcaaaccat 66  Q
    ||||||| |||| ||||||||||||||| ||||||||||||||    
T  26174802 agccaatagagatgcatagccatgtgatatgtcttcaaaccat 26174760  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 7734652 - 7734612
Alignment:
Q  26 ccaatggagaggcatagccatgtgatgtgtcttcaaaccat 66  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  7734652 ccaatggagatgcatagccatgtgatgtgtcttcaaaccat 7734612  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 66
Target Start/End: Complemental strand, 41831984 - 41831942
Alignment:
Q  24 agccaatggagaggcatagccatgtgatgtgtcttcaaaccat 66  Q
    ||||||| |||| |||||||||||||| |||||||||||||||    
T  41831984 agccaatagagatgcatagccatgtgaggtgtcttcaaaccat 41831942  T

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Target: scaffold1412 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1412
Description:

Target: scaffold1412; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 66
Target Start/End: Original strand, 542 - 584
Alignment:
Q  24 agccaatggagaggcatagccatgtgatgtgtcttcaaaccat 66  Q
    ||||||| |||| ||||||||||||||||||||||||||||||    
T  542 agccaatagagatgcatagccatgtgatgtgtcttcaaaccat 584  T

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Target: scaffold0001 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 66
Target Start/End: Original strand, 145401 - 145443
Alignment:
Q  24 agccaatggagaggcatagccatgtgatgtgtcttcaaaccat 66  Q
    ||||||| |||| ||||||||||||||||||||||||||||||    
T  145401 agccaatagagatgcatagccatgtgatgtgtcttcaaaccat 145443  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 66
Target Start/End: Original strand, 6823813 - 6823855
Alignment:
Q  24 agccaatggagaggcatagccatgtgatgtgtcttcaaaccat 66  Q
    ||||||| |||| ||||||||||||||||||||||||||||||    
T  6823813 agccaatagagatgcatagccatgtgatgtgtcttcaaaccat 6823855  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 66
Target Start/End: Original strand, 31270221 - 31270263
Alignment:
Q  24 agccaatggagaggcatagccatgtgatgtgtcttcaaaccat 66  Q
    ||||||| |||| ||||||||||||||||||||||||||||||    
T  31270221 agccaatcgagatgcatagccatgtgatgtgtcttcaaaccat 31270263  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 94
Target Start/End: Complemental strand, 24038783 - 24038752
Alignment:
Q  63 ccatgttgatgcattcaaaccataggtcaaaa 94  Q
    ||||||||||||||||||||||||||||||||    
T  24038783 ccatgttgatgcattcaaaccataggtcaaaa 24038752  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 24038837 - 24038796
Alignment:
Q  24 agccaatggagaggcatagccatgtgatgtgtcttcaaacca 65  Q
    ||||||| |||| |||||||||||||| ||||||||||||||    
T  24038837 agccaatagagatgcatagccatgtgaggtgtcttcaaacca 24038796  T

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Target: scaffold0525 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0525
Description:

Target: scaffold0525; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 66
Target Start/End: Original strand, 6682 - 6724
Alignment:
Q  24 agccaatggagaggcatagccatgtgatgtgtcttcaaaccat 66  Q
    ||||||| |||| |||||||||||||| |||||||||||||||    
T  6682 agccaatagagatgcatagccatgtgaggtgtcttcaaaccat 6724  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 100
Target Start/End: Complemental strand, 21255944 - 21255907
Alignment:
Q  63 ccatgttgatgcattcaaaccataggtcaaaatcaatg 100  Q
    |||||||||||||||||||||||||| ||||| |||||    
T  21255944 ccatgttgatgcattcaaaccataggccaaaaccaatg 21255907  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 35305414 - 35305463
Alignment:
Q  17 aacaaggagccaatggagaggcatagccatgtgatgtgtcttcaaaccat 66  Q
    ||||| |||||||| |||| |||||||||||  |||||||||||||||||    
T  35305414 aacaatgagccaatagagatgcatagccatgcaatgtgtcttcaaaccat 35305463  T

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