View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8606A_low_124 (Length: 279)
Name: NF8606A_low_124
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_124 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 12 - 276
Target Start/End: Complemental strand, 40770917 - 40770653
Alignment:
| Q |
12 |
atgaaaaaattgtgcaaatattgttataagtggaagtagtaatacctccgtgcatactgctatgaaatatggtctatttgattcagaagtcataaatgga |
111 |
Q |
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| T |
40770917 |
atgaaaaaattgtgcaaatattgttataagtcgaagtagtaatacctctgtgcatactgctatgaaatatggtctatttgattcagaagtcataaatgga |
40770818 |
T |
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| Q |
112 |
gctatgctgttattgactgatcttagatttgttggtagttcacatattgatgaagaacaggattccattgtgaatggaaaatgttgtatgcttaatgatt |
211 |
Q |
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| T |
40770817 |
gctatgctgttattgactgatctttgatttgttggtagttcacatattgatgaagaacaggattccattgtgaatggaaaatgttgtatgcttaatgatt |
40770718 |
T |
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| Q |
212 |
gatgatgtattaatagtaaatagtttgaagttgtaattttatttttattaataaatattcgtact |
276 |
Q |
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| T |
40770717 |
gatgatgtatttatagtaaatagtttgaagttgtaattttatttttattaataaatattcgtact |
40770653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 15 - 276
Target Start/End: Original strand, 8332165 - 8332426
Alignment:
| Q |
15 |
aaaaaattgtgcaaatattgttataagtggaagtagtaatacctccgtgcatactgctatgaaatatggtctatttgattcagaagtcataaatggagct |
114 |
Q |
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| T |
8332165 |
aaaaaattgtgcaaatattgttataagtcgaagtagtaatacctctgtgcatactgctatgaaatatggtctatttgattcagaagtcataaatggagct |
8332264 |
T |
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| Q |
115 |
atgctgttattgactgatcttagatttgttggtagttcacatattgatgaagaacaggattccattgtgaatggaaaatgttgtatgcttaatgattgat |
214 |
Q |
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| T |
8332265 |
atgctgttattgactgatctttgatttgttggtagttcacatattgatgaagaacaggattccattgtgaatggaaaatgttgtatgcttaatgattgat |
8332364 |
T |
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| Q |
215 |
gatgtattaatagtaaatagtttgaagttgtaattttatttttattaataaatattcgtact |
276 |
Q |
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| T |
8332365 |
gatgtatttatagtaaatagtttggagttgtaattttatttttattaataaatattcgtact |
8332426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 52 - 181
Target Start/End: Complemental strand, 17020657 - 17020528
Alignment:
| Q |
52 |
aatacctccgtgcatactgctatgaaatatggtctatttgattcagaagtcataaatggagctatgctgttattgactgatcttagatttgttggtagtt |
151 |
Q |
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| T |
17020657 |
aatacctctgtgcaaactgcaatgaagaaaggtcgattagtttcagaagtcattaatggagctatgctgcaattaactgatctttgattttgtggtagtt |
17020558 |
T |
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| Q |
152 |
cacatattgatgaagaacaggattccattg |
181 |
Q |
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| T |
17020557 |
cactaattgatgaagagcttgattccattg |
17020528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 46 - 181
Target Start/End: Original strand, 119338 - 119473
Alignment:
| Q |
46 |
agtagtaatacctccgtgcatactgctatgaaatatggtctatttgattcagaagtcataaatggagctatgctgttattgactgatcttagatttgttg |
145 |
Q |
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|||||||||||||| ||||| ||||| | ||| | |||| ||| | |||||||||||| ||||||||||||||| ||| ||||||||| ||||| || |
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| T |
119338 |
agtagtaatacctctgtgcaaactgcaacgaagaaaggtcgattagtttcagaagtcattaatggagctatgctgcaattaactgatctttgattttgtg |
119437 |
T |
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| Q |
146 |
gtagttcacatattgatgaagaacaggattccattg |
181 |
Q |
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| T |
119438 |
gtagttcactgattgatgaagaaattgattccattg |
119473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 179
Target Start/End: Complemental strand, 19777307 - 19777177
Alignment:
| Q |
49 |
agtaatacctccgtgcatactgctatgaaatatggtctatttgattcagaagtcataaatggagctatgctgttattgactgatcttagatttgttggta |
148 |
Q |
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||||||||||| ||||| | ||| |||||| |||||||||| || ||||| ||||| ||||||||||||||| ||| |||||| | |||| ||| ||| |
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| T |
19777307 |
agtaatacctctgtgcagattgcaatgaaaaatggtctattagactcagatgtcatcaatggagctatgctgcaatttactgatggttgattggtttgta |
19777208 |
T |
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| Q |
149 |
gttcacatattgatgaagaacaggattccat |
179 |
Q |
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| T |
19777207 |
tttcacttatggatgaagaactggactccat |
19777177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 53 - 182
Target Start/End: Original strand, 143996 - 144125
Alignment:
| Q |
53 |
atacctccgtgcatactgctatgaaatatggtctatttgattcagaagtcataaatggagctatgctgttattgactgatcttagatttgttggtagttc |
152 |
Q |
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||||||| ||||| ||||| ||||| | |||||||| |||||||||||| | ||||||||||||| ||| ||||||||| ||||| ||||||||| |
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| T |
143996 |
atacctctgtgcaaactgcaatgaagaaaggtctattactttcagaagtcatcattggagctatgctgcaattaactgatctttgattttgtggtagttc |
144095 |
T |
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| Q |
153 |
acatattgatgaagaacaggattccattgt |
182 |
Q |
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| T |
144096 |
actaattaatgaagaacttgattccattgt |
144125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 53 - 182
Target Start/End: Original strand, 18059703 - 18059832
Alignment:
| Q |
53 |
atacctccgtgcatactgctatgaaatatggtctatttgattcagaagtcataaatggagctatgctgttattgactgatcttagatttgttggtagttc |
152 |
Q |
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||||||| ||||| ||||| ||||| | |||||||| |||||||||||| | |||||||||||| ||| ||||||||| ||||| ||||||||| |
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| T |
18059703 |
atacctctgtgcaaactgcaatgaagaaaggtctattactttcagaagtcatcattggagctatgctacaattaactgatctttgattttgtggtagttc |
18059802 |
T |
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| Q |
153 |
acatattgatgaagaacaggattccattgt |
182 |
Q |
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| T |
18059803 |
actaattgatgaagaacttgattccattgt |
18059832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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