View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8606A_low_13 (Length: 452)
Name: NF8606A_low_13
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_13 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 411; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 20 - 446
Target Start/End: Complemental strand, 31742030 - 31741604
Alignment:
| Q |
20 |
tcatgttcttctcaaagttgtgttgtttgcgccttcagtttacttccaggttcgccatcccagctatcaattttggaaaatcagtcgcgtcctgatttaa |
119 |
Q |
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| T |
31742030 |
tcatgttcttctcaaagttgtgttgtttgcgccttcagtttacttccaggttcgccatcccagctatcaattttggaaaatcagacgcgtcctgatttaa |
31741931 |
T |
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| Q |
120 |
acttgtttaagctcttcacagctttatacctatacttcctctctatctctatctttcttgtttgcttgctcgagcaatagaattgtggtgtgtgttctat |
219 |
Q |
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| T |
31741930 |
acttgtctaagctcttcacagctttatacctatacttcctctctatctctatctttcttgtttgcttgctcgagcaatagaattgtggtgtgtgttctat |
31741831 |
T |
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| Q |
220 |
ctcgactcatgaagtaaatatattctgataaacacgttctttagtaatatcatcatgactcgtgaagtcatgtgctttttagactacattactgatttca |
319 |
Q |
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| T |
31741830 |
ctcgactcatgaagtaaatatattctgataaagacgttctttagtaatatcatcatgactcgtgaagtcatgtgctttttagactacattactgatttca |
31741731 |
T |
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| Q |
320 |
tttttgtcaaatctccatcgagagcattcccatatgcttgaaaatgttaggctaaatttgtcatttggtaccctaatattgacattgaatttcgatcctt |
419 |
Q |
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| T |
31741730 |
tttttgtcaaatctccatcgagagcattcccatatgcttgaaaatgttaggctaaattggtcatttggtaccctaatattgacattgaatttcgatcctt |
31741631 |
T |
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| Q |
420 |
gaattcattagttgttccatatcattg |
446 |
Q |
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| T |
31741630 |
gaattcattagttgttccatatcattg |
31741604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 31734883 - 31734816
Alignment:
| Q |
162 |
ctatctctatctttcttgtttgcttgctcgagcaatagaattgtggtgtgtgttctatctcgactcat |
229 |
Q |
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| T |
31734883 |
ctatctataactttcttatttgcttgcgcgagctatagaattgtggtgtgtgttccatctcgactcat |
31734816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 160 - 229
Target Start/End: Complemental strand, 31747039 - 31746970
Alignment:
| Q |
160 |
ctctatctctatctttcttgtttgcttgctcgagcaatagaattgtggtgtgtgttctatctcgactcat |
229 |
Q |
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| T |
31747039 |
ctctatctctatctttcttatttaattgcttgagcaatagaattgtggtttgtgttccatctcgattcat |
31746970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 294
Target Start/End: Complemental strand, 13218584 - 13218520
Alignment:
| Q |
230 |
gaagtaaatatattctgataaacacgttctttagtaatatcatcatgactcgtgaagtcatgtgc |
294 |
Q |
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| T |
13218584 |
gaagcaaaaatattctgataaagacgttcctcagtaatatcatcatgactttcgaagtcatgtgc |
13218520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 279
Target Start/End: Original strand, 239137 - 239174
Alignment:
| Q |
242 |
ttctgataaacacgttctttagtaatatcatcatgact |
279 |
Q |
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| T |
239137 |
ttctgataaagacgttcttcagtaatatcatcatgact |
239174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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