View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8606A_low_134 (Length: 270)
Name: NF8606A_low_134
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_134 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 7 - 255
Target Start/End: Complemental strand, 7669800 - 7669552
Alignment:
| Q |
7 |
gaagctagtgaaaccacttggccatctcgccgcgcacttgtagcttttgcctcagtttgtagattgtggagagacataacaaagggtgttgtgaagacac |
106 |
Q |
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| T |
7669800 |
gaagctagtgaaaccacttggccatctctccgcgcacttgtagcttgtgcctcagtttgtagattgtggagagacataacaaagggtgttgtgaagacac |
7669701 |
T |
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| Q |
107 |
ttgaacagtgtggttggatcactttccctatatcattgaagcaggtaattttttctttatctttatgcatttaatttgatgacatttttgtttcaagctt |
206 |
Q |
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| T |
7669700 |
ttgaacagtgtggttggatcactttccctatatcattgaagcaggtaattttttctttatctttatgtatttaatttgatgacatttttgtttcaagctt |
7669601 |
T |
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| Q |
207 |
ggaagcacatggtgtatggtactaaatgtgttattactttgtcttttat |
255 |
Q |
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| T |
7669600 |
ggaagcacatggtgtatggtactaaatgtgttattactttgtcttttat |
7669552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 7 - 255
Target Start/End: Complemental strand, 7089974 - 7089722
Alignment:
| Q |
7 |
gaagctagtgaaaccacttggccatctcgccgcgcacttgtagcttttgcctcagtttgtagattgtggagagacataacaaagggtgttgtgaagacac |
106 |
Q |
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| T |
7089974 |
gaagctagtgaaacctcttggccatctcgccgtgcacttgtagcttgtgcctcagtttgtagattatggagagacataacaaagggtgttgtgaagacac |
7089875 |
T |
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| Q |
107 |
ttgaacagtgtggttggatcactttccctatatcattgaagcaggtaattttttctt----tatctttatgcatttaatttgatgacatttttgtttcaa |
202 |
Q |
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| T |
7089874 |
ttgaacagtgtggttggatcactttccctatatcactgaagcaggtaattttttttttcactttatttatgtatttgatttgatgtcatttttgttttaa |
7089775 |
T |
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| Q |
203 |
gcttggaagcacatggtgtatggtactaaatgtgttattactttgtcttttat |
255 |
Q |
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| T |
7089774 |
gcttggaagcacatggtgtaaggtactaaatgtgtaattactttgtcctttat |
7089722 |
T |
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