View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8606A_low_137 (Length: 268)
Name: NF8606A_low_137
Description: NF8606A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8606A_low_137 |
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Alignment Details
Target: chr7 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 8029601 - 8029671
Alignment:
| Q |
9 |
ctattatgattatagcggtgaagatttcaagtaagtttaaaaattcaattatcaaaattcaagcaaatgaa |
79 |
Q |
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| T |
8029601 |
ctattatgattatagcggtcaagatttcaagtaagtttaaaaattcaattatcaaaattcaagcaaatgaa |
8029671 |
T |
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Target: chr7; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 9 - 106
Target Start/End: Complemental strand, 13948969 - 13948871
Alignment:
| Q |
9 |
ctattatgattatagcggtgaagatttcaagtaagtttaaaaat-tcaattatcaaaattcaagcaaatgaaatcaacatgaaagacgatgattattta |
106 |
Q |
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| T |
13948969 |
ctattatgattatagcagtcaagatttcaagtaagtttgaaaatctcaattatcaaaattcaagcaaacaaaatcaacatgaaaggcaatgattgttta |
13948871 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 10 - 105
Target Start/End: Original strand, 1603230 - 1603326
Alignment:
| Q |
10 |
tattatgattatagcggtgaagatttcaagtaagtttaaaaat-tcaattatcaaaattcaagcaaatgaaatcaacatgaaagacgatgattattt |
105 |
Q |
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| T |
1603230 |
tattatgattatagcagtcaagatttcaagtaagtttgaaaatctcaattatcaaaattcaaccaaacaaaatcaacatgaaaggcaatgattattt |
1603326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 10 - 105
Target Start/End: Original strand, 44368716 - 44368812
Alignment:
| Q |
10 |
tattatgattatagcggtgaagatttcaagtaagtttaaaaat-tcaattatcaaaattcaagcaaatgaaatcaacatgaaagacgatgattattt |
105 |
Q |
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| T |
44368716 |
tattatgattatagcagtcaagatttcaagtaagtttgaaaatctcaattatcaaaattcaaccaaacaaaatcaacatgaaaggcaatgattattt |
44368812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 9 - 137
Target Start/End: Original strand, 30904483 - 30904609
Alignment:
| Q |
9 |
ctattatgattatagcggtgaagatttcaagtaagtttaaaaat-tcaattatcaaaattcaagcaaatgaaatcaacatgaaagacgatgattatttat |
107 |
Q |
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|||||||||||||||| || |||||||||||||||||||||||| ||||||| ||||| || | | || ||||||||||| ||| | |||||| |||| |
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| T |
30904483 |
ctattatgattatagcagtcaagatttcaagtaagtttaaaaatctcaattagcaaaactcgatcgaacaaaatcaacatgtaaggcaatgattgttta- |
30904581 |
T |
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| Q |
108 |
agtaatttataagctatattaagacgatat |
137 |
Q |
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| T |
30904582 |
--tattttataagctatattaagacgatat |
30904609 |
T |
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